View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_low_1 (Length: 745)

Name: NF0852_low_1
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_low_1
NF0852_low_1
[»] chr1 (1 HSPs)
chr1 (31-734)||(867568-868274)


Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 31 - 734
Target Start/End: Complemental strand, 868274 - 867568
Alignment:
Q  31 taaacatgtcaaaaactagacacatcatcttaaatgtaaagtgtccgtgctaagtagcttttgagtccaatggcccaactcatcaaaacttttgttttgg 130  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  868274 taaacatgtcaaaaactagacacgtcatcttaaatgtaaagtgtccgtgctaagtagcttgtgagtctaatggcccaactcatcaaaacttttgttttgg 868175  T
Q  131 gtttcatatgggttccctccattggagataatcctattcgaggcagtgtcgggcaataaatgtgggcacgtctcccagctgagattttagcattagttag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868174 gtttcatatgggttccctccattggagataatcctattcgaggcagtgtcgggcaataaatgtgggcacgtctcccagctgagattttagcattagttag 868075  T
Q  231 ccctgatgtgggagactagttttttcaactagatcaacccccgtttgtaactcaacaaaactttatttaccataaaagtgaagattttaatcccataaag 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  868074 ccctgatgtgggagactagttttttcaactagatcaacccccgtttgtaactcatcaaaacttt-tttaccataaaagtgaagattttaatcccataaag 867976  T
Q  331 ttttttctttgccta----ttttaccaaattatgtgatgactgttgtgtacaatgtagttttagttaccagttatgcttcttagattcattatagagatt 426  Q
    |||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  867975 ttttttctttgcctaaagattttaccaaattatgtgatgacttttgtgtacaatgtagttttagttaccagttatgcttcttagattcattatagagatt 867876  T
Q  427 ttgataatcaatattttaattcaggttttggaatggattttggagaaattgctcaaagaaaatgtaaaagaccatggtcgcttctgtgagctcatctttt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  867875 ttgataatcaatattttaattcaggttttggaatggattttggagaaattgctcaaagaaaatgtaaaagaccatggtcgcttctctgagctcatctttt 867776  T
Q  527 tatgtggaaagctgaagaatgtgcaactaggaatcaatgtttttacttccatggagggtgttggagttaaaccaacatccctggttttcaattcccttat 626  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  867775 tatgtggaaagctgaagaatgtgcaactaggaattaatgtttttacttccatggagggtgttggagttaaaccaacatccctggttttcaattcccttat 867676  T
Q  627 aagtgcatgtttgtcttcccatgacattgttacagcatatagtttatttgagatcatggagagttcagagaactacaaacctgattttcacacttataat 726  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  867675 aagtgcatgtttgtcttcccatgacattgttacagcgtatagtttatttgagatcatggagagttcagagaactacaaacctgattttcacacttataat 867576  T
Q  727 aacttcat 734  Q
    ||||||||    
T  867575 aacttcat 867568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 256 times since January 2019
Visitors: 6127