View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_10 (Length: 521)
Name: NF0852_low_10
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 3 - 426
Target Start/End: Complemental strand, 55173680 - 55173257
Alignment:
| Q |
3 |
tatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttat |
102 |
Q |
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| T |
55173680 |
tatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttat |
55173581 |
T |
|
| Q |
103 |
gaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgcaagcagaaggatgctcccg |
202 |
Q |
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| T |
55173580 |
gaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgcaagcagaaggatgctcccg |
55173481 |
T |
|
| Q |
203 |
atcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173480 |
atcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgca |
55173381 |
T |
|
| Q |
303 |
atggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagtatttggtga |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173380 |
atggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagtatttggtga |
55173281 |
T |
|
| Q |
403 |
tccagtatcacagagatctgctga |
426 |
Q |
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| T |
55173280 |
tccagtatcacagagatctgctga |
55173257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 27721586 - 27721690
Alignment:
| Q |
283 |
ttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgct |
382 |
Q |
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|
||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||| | ||||||||||||| ||||| ||| |
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| T |
27721586 |
ttggcagattaatgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgct |
27721685 |
T |
|
| Q |
383 |
cagta |
387 |
Q |
| |
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||||| |
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| T |
27721686 |
cagta |
27721690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
| Q |
67 |
attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag |
166 |
Q |
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||||| |||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||| ||||| |||||||| | | | | |||| |
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| T |
27721147 |
attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag |
27721246 |
T |
|
| Q |
167 |
ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
216 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
27721247 |
ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
| Q |
13 |
atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc |
62 |
Q |
| |
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|||||||| || || ||||||||||| ||||||||||| ||||||||||| |
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| T |
27720986 |
atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc |
27721035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
163 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
216 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||| || |||||| |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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