View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_11 (Length: 509)
Name: NF0852_low_11
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 11759345 - 11759840
Alignment:
| Q |
1 |
tgaaataaaatgaagtgtgtgggttaaattcacattatagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagttacttcaggttgt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11759345 |
tgaaataaaatgaagtgtgtgggttaaattcacattttagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagttacttcaggtttt |
11759444 |
T |
|
| Q |
101 |
ccaacgagagattttaccttttacttgcaagttgtaaatgtagggtaaatttctttttaaaaattgtaccagctttaaataaaatatctataagattata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759445 |
ccaacgagagattttaccttttacttgcaagttgtaaatgtagtgtaaatttctttttaaaaattgtaccagctttaaataaaatatctataagattata |
11759544 |
T |
|
| Q |
201 |
gaaattattatagtattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaatttaatttgtat |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759545 |
gaaattattataatattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaatttaatttgtat |
11759644 |
T |
|
| Q |
301 |
atagcgatactgttaaacttttttacacgcccataaaaataaattttgaaatttaatttggttgttttattgttacattacatgattgtcttcttctcat |
400 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759645 |
ataacgatactgtaaaacttttttacacgcgcataaaaataaattttaaaatttaatttggttgttttattgttacattacatgattgtcttcttctcat |
11759744 |
T |
|
| Q |
401 |
ccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatcctcatct |
496 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11759745 |
ccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatcctcatct |
11759840 |
T |
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