View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_low_12 (Length: 499)

Name: NF0852_low_12
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_low_12
NF0852_low_12
[»] chr3 (1 HSPs)
chr3 (30-493)||(29335647-29336110)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 493
Target Start/End: Original strand, 29335647 - 29336110
Alignment:
30 aaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgcaatgaaaatccatcagtttatagtca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29335647 aaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgcaatgaaaatccatcagtttatagtca 29335746  T
130 gtaagtatgaaaacatgagaagaaactcttaggatagcaaatatggttttaaagtaaacttgtgattcaagggcttgataattgaactttttgttgcaaa 229  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29335747 gtaagtatgaaaacaagagaagaaactcttagaatagcaaatatggttttaaagtaaacttgtgattcaagggcttgataattgaactttttgttgcaaa 29335846  T
230 atcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcctatagcctctcttaatattcatttaacacctg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
29335847 atcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcatatagcctctcttaatattcatttaacacctg 29335946  T
330 aaagaaaatggccaaatattttatttaatttatttttctgaaaataaagttcatttacccttggtatttgatttagagacaagatgttagttggtgctat 429  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
29335947 aaagaaaatggccaaatattttatttagtttatttttctgaaaataaagtccatttacccttggtatttgatttagagacaagatgttagttggtgctat 29336046  T
430 atgaaattaattaaattcttgacttttgtgagcaaggtttcatacctatgtttatattcttcga 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
29336047 atgaaattaattaaattcttgacttttgtgagcaaggtttcatacctatgtttatgttgttcga 29336110  T

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