View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_15 (Length: 416)
Name: NF0852_low_15
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 42744075 - 42744357
Alignment:
| Q |
5 |
tttgctgtgtaagccatttccgttgttgcttgagctcggtcattgtccccatttctgctacgatcttcctcctttgcatgaacctccctttatctagtct |
104 |
Q |
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| T |
42744075 |
tttgctgtctaagtcatttccgttgttgcttgagctcggtcattgtccccatttctgctacgatcttcctcctttgcatgaacctccctttatctagtct |
42744174 |
T |
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| Q |
105 |
gttgtcgtcgcctgttttaccataatttgaggttagtgtcgcaattcattttgtgtttgcctcaatcgtcagccctccatttttgttataacattagttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42744175 |
gttgtcgtcgcctgttttaccataatttgaggttagtgtcacaattcattttgtggttgcctcaatcgtcagccctccatttttgtcataacattagttt |
42744274 |
T |
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| Q |
205 |
tactcacttctttttgtatatgagtatgaatttcatgaataatgtaatgcaactccttttattaggtttgatttgtgctttttt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42744275 |
tactcacttctttttgtatatgagtatgaatttcatgaataatgtaatgcaactcc-tttattaggtttgatttgtgctttttt |
42744357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 42744384 - 42744437
Alignment:
| Q |
285 |
ttttggaggaaattgctccaaaacctattcgcagaaagagcttcaataaaggaa |
338 |
Q |
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| T |
42744384 |
ttttggaggaaattgctccaaaacttattcgcagaaagagcttcaataaaggaa |
42744437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 42744461 - 42744509
Alignment:
| Q |
339 |
atgaaggtcaagttgcatttcaaagggaagtgagtgaaactcatattac |
387 |
Q |
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| T |
42744461 |
atgaaggtcaagttgcattccaacgggaagtgagtgaaactcatattac |
42744509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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