View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0852_low_16 (Length: 416)
Name: NF0852_low_16
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0852_low_16 |
 |  |
|
[»] scaffold0896 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 235 - 408
Target Start/End: Original strand, 32649321 - 32649494
Alignment:
Q |
235 |
aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacaatgatattaaccatcaggaattgcataagga |
334 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
32649321 |
aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacatagatattaaccatcaggaattgcataagga |
32649420 |
T |
 |
Q |
335 |
taacgattggcaggctatcaaactaattagttataatagaaagttctactccttgttctttattgcttcatctc |
408 |
Q |
|
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
32649421 |
taacaattggcaggctatcaaactaattagttatagtagaaagttctactccttgttctttattgcttcatctc |
32649494 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 32649169 - 32649281
Alignment:
Q |
124 |
cagagaatatgtctgttgttacagacttatgtgtggtctcgtgatatacg-atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtata |
222 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
T |
32649169 |
cagagaatatgtctgttgttacaaacttatgtgtggtctcgtgatatacgaatgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtata |
32649268 |
T |
 |
Q |
223 |
tttagtcattaga |
235 |
Q |
|
|
|||||||||||| |
|
|
T |
32649269 |
cttagtcattaga |
32649281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 32649095 - 32649164
Alignment:
Q |
77 |
gtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtctgttgttaca |
146 |
Q |
|
|
||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
T |
32649095 |
gtttaagacattacttgaaatatattgtagtatgaatgaacttttcgcagaaaatatgtctgttgttaca |
32649164 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 32225581 - 32225625
Alignment:
Q |
35 |
aaactagatcgtccacccgtgctgccgcacgtatcatatatagtt |
79 |
Q |
|
|
||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
T |
32225581 |
aaactagatcgtccaccggtgctgccgcacgggtcatatatagtt |
32225625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatata |
76 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
23976706 |
actagatcgtccacccgtgctgccgcacgggtcatatata |
23976745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q |
36 |
aactagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
T |
44376078 |
aactagatcgtccacccgtgctgccgcacgggtcatata |
44376116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q |
36 |
aactagatcgtccacccgtgctgccgcacgtatcatatatag |
77 |
Q |
|
|
|||||||||||| ||||||||||||||||| |||||||||| |
|
|
T |
17558824 |
aactagatcgtctacccgtgctgccgcacgggtcatatatag |
17558865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 22136279 - 22136449
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtc |
136 |
Q |
|
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||| |||||||| ||||| || ||||||||||||| |
|
|
T |
22136279 |
actagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattactcgaaatatattgtagtatga---aacttgtcgcagagaatatgtc |
22136375 |
T |
 |
Q |
137 |
tgttgttacagacttatgtgtggtctcgtgatatac----gatgtaacgtagtgtgttttgttgtttcactaaa |
206 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |
|
|
T |
22136376 |
tgttgttacaaacttatgtgtggtctcgtgatatactacaaatgtaacgtagtgtgttttgctgttccactaaa |
22136449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 16349713 - 16349769
Alignment:
Q |
35 |
aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt |
91 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |
|
|
T |
16349713 |
aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt |
16349769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt |
91 |
Q |
|
|
||||||||||||||||||||||||||||| |||||||||||| || |||||||| |
|
|
T |
4082628 |
actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt |
4082574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q |
36 |
aactagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
T |
30096275 |
aactagatcgtccacccgtgctgccgcacggatcatata |
30096313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 16222745 - 16222687
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaa |
95 |
Q |
|
|
||||||||||| |||||||||||||||| | |||||||||| | || |||||| ||||| |
|
|
T |
16222745 |
actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaa |
16222687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 40951524 - 40951482
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtt |
79 |
Q |
|
|
||||||||||| ||||||||||||||||| |||||||||||| |
|
|
T |
40951524 |
actagatcgtctacccgtgctgccgcacgggtcatatatagtt |
40951482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
25099236 |
actagatcgtccacccgtgctgccgcacgggtcatata |
25099273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
25158326 |
actagatcgtccacccgtgctgccgcacgggtcatata |
25158363 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 16367918 - 16367864
Alignment:
Q |
35 |
aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta |
89 |
Q |
|
|
||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
T |
16367918 |
aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta |
16367864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta |
89 |
Q |
|
|
||||||||||||||| ||||||||||||| |||||||||||| || |||||| |
|
|
T |
42308123 |
actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta |
42308175 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q |
36 |
aactagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
T |
405353 |
aactagatcgtccacccgtgctgccgcacgggtcatata |
405391 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 771688 - 771642
Alignment:
Q |
35 |
aaactagatcgtccacccgtgctgccgcacgtatcatatatagttta |
81 |
Q |
|
|
||||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
T |
771688 |
aaactaggtcgtctacccgtgctgccgcacgggtcatatatagttta |
771642 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 17695662 - 17695634
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacg |
65 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
17695662 |
actagatcgtccacccgtgctgccgcacg |
17695634 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 28947451 - 28947491
Alignment:
Q |
34 |
taaactagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
28947451 |
taaactagatcgtccacccgtgctgccgcacgggtcatata |
28947491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 27840301 - 27840359
Alignment:
Q |
31 |
aaataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta |
89 |
Q |
|
|
|||| |||||||||||| |||||||||| |||||| |||| |||||||||| |||||| |
|
|
T |
27840301 |
aaatgaactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta |
27840359 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 51387129 - 51387171
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtt |
79 |
Q |
|
|
||||||||||| ||||||||||||||||| |||||||||||| |
|
|
T |
51387129 |
actagatcgtctacccgtgctgccgcacgggtcatatatagtt |
51387171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 47250361 - 47250304
Alignment:
Q |
32 |
aataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta |
89 |
Q |
|
|
|||| ||||||||||||| ||| ||||||||||| |||||||||||| || |||||| |
|
|
T |
47250361 |
aatatactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacatta |
47250304 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 50293699 - 50293655
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagttta |
81 |
Q |
|
|
||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
T |
50293699 |
actagatcgtctacccatgctgccgcacgggtcatatatagttta |
50293655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 31097943 - 31097904
Alignment:
Q |
35 |
aaactagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
31097943 |
aaactagatcgtccacccgtgctgccgcacgggtcatata |
31097904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
1146 |
actagatcgtccacccgtgctgccgcacgggtcatata |
1109 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
8657064 |
actagatcgtccacccgtgctgccgcacgggtcatata |
8657101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatata |
74 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||| |
|
|
T |
33289070 |
actagatcgtccacccgtgctgccgcacgggtcatata |
33289107 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 53693258 - 53693213
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagtttaa |
82 |
Q |
|
|
||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
T |
53693258 |
actagatcgtctacccgtgctgccgcacaggtcatatatagtttaa |
53693213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 44708227 - 44708271
Alignment:
Q |
37 |
actagatcgtccacccgtgctgccgcacgtatcatatatagttta |
81 |
Q |
|
|
||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
T |
44708227 |
actagatcgtctacccgtgctgccgcacgggtcatatataattta |
44708271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1761 times since January 2019
Visitors: 6149