View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_17 (Length: 414)
Name: NF0852_low_17
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 97 - 414
Target Start/End: Original strand, 27496815 - 27497132
Alignment:
| Q |
97 |
aaaactttgaaggagactctaagcaatatcatgtgaatatgtgatcccttggctcttaattactagaccctataatagagtcccttcaaagtttattaat |
196 |
Q |
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| T |
27496815 |
aaaactttgaaagagactctaagtaatatcatgtgaatatgtgatcccttggctcttaattactagatcctataatagagtcccttcaaaatttattaat |
27496914 |
T |
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| Q |
197 |
tgtgtatttggtttgcaaaggcccttaaaatctaagaatatggaatcgtagacaaaccataaccagtggtacgaaagaaagcttttgctagtagaattag |
296 |
Q |
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| T |
27496915 |
tgtgtatttggtttgcaaaggcccttaaaatctaagaatatggaatcatagacaaaccataaccagtggtacgaaagaaagcttttgctagtagaattag |
27497014 |
T |
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| Q |
297 |
gcttgtgccgttcattttcaatatttcataagtgcttaggtgaagagaggaatgaacattttaactaataaaccaaaaacacagagtagatgtttgagta |
396 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27497015 |
gcttgtgccgttcattttcaaaatttcgtaagtgcttaggtgaagagaggaatgaacattttaactaataaaccaaaaacacagagtagatgtttgagta |
27497114 |
T |
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| Q |
397 |
gccgaattaattttcatt |
414 |
Q |
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|||||||||||||||||| |
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| T |
27497115 |
gccgaattaattttcatt |
27497132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 27423588 - 27423537
Alignment:
| Q |
363 |
aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcatt |
414 |
Q |
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||||||||||||||||| || |||||||||||||| |||||| ||| ||||| |
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| T |
27423588 |
aataaaccaaaaacacaaaggagatgtttgagtagtcgaattcattgtcatt |
27423537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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