View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0852_low_18 (Length: 410)
Name: NF0852_low_18
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0852_low_18 |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 396
Target Start/End: Complemental strand, 29292753 - 29292457
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29292753 |
ttaatatatttagaacaaccgacgtctaattcgattgatagaaatcagaaggtaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
29292654 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcatttattcatcttttcgttagttactataaacgcagtggcgtggcgatacacaacaaatacataattgc |
299 |
Q |
|
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
29292653 |
atcgaacttacaacatgaactataactcttcatttattcatcttttcgttagttactataaacacagtggcgtggcgatacacaacaaatacataattgc |
29292554 |
T |
 |
Q |
300 |
attcatcttttcgctagttactataaagatagtggcgtggcgatagacaacaaatacataactgcttagtccattgttcattgcagccttcgttata |
396 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29292553 |
attcatcttttcgctagttactataaaggcagtggcgtggcgatagacaacaattacataactgcttagtccattgttcattgcagccttcgttata |
29292457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 29263595 - 29263307
Alignment:
Q |
109 |
ttagtacaactgacgtctaattcgattgatagaaatcagaaag-caaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaact |
207 |
Q |
|
|
|||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
29263595 |
ttagaacaaccgacgtctaattcgattgatagaaatcagaagggcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcgaact |
29263496 |
T |
 |
Q |
208 |
tacaacatgaactataactcttcatttattcatcttttcgttagttactataaacgcagtggcgtggcgatacacaacaaatacataattgcattcatct |
307 |
Q |
|
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29263495 |
tacaacatgaactataattcttcatttattcatcttttcgttagttactataaactcagtggcgtggcgatacacaacaaatacataattgcattcatct |
29263396 |
T |
 |
Q |
308 |
tttcgctagttactataaagatagtggcgtggcgatagacaacaaatacataactgcttagtccattgttcattgcagccttcgttata |
396 |
Q |
|
|
||||||||||||||||||| |||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
29263395 |
tttcgctagttactataaacgcagtggcatggcgatagacaacgaacacataattgcttagtccattgttcattgcagccttcgttata |
29263307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 46135687 - 46135794
Alignment:
Q |
127 |
aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataact |
226 |
Q |
|
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
|
|
T |
46135687 |
aattcgattgataagaattcgaaagcaaaaagaatttaaggttcaaataaccaataaaatacctagtattgaaatcgaacttacaacatgaactatgact |
46135786 |
T |
 |
Q |
227 |
cttcattt |
234 |
Q |
|
|
|||||||| |
|
|
T |
46135787 |
cttcattt |
46135794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 35238890 - 35238990
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| |||||| |||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||| |
|
|
T |
35238890 |
ttaatatatttagaacaaccgacgtcaaattcgattgataggaatcagaagacaaaaaaaatttaaggttcaaataattaataaaatacctagcattgaa |
35238989 |
T |
 |
Q |
200 |
a |
200 |
Q |
|
|
| |
|
|
T |
35238990 |
a |
35238990 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 3448946 - 3449081
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| || | |||| |||||||| |||| ||| ||||||| ||||||||||||||||||| ||||||||| || |||||| |
|
|
T |
3448946 |
ttaatatatttagaacaaccgatattgaattacattgataggaatctgaaggcaaaaataatttaaggttcaaataactaataaaatagttagcattgag |
3449045 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||| ||||| ||||||||||||| |||||||||||| |
|
|
T |
3449046 |
atcgaacttgcaacatgaactatgactcttcattta |
3449081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 12180799 - 12180934
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa-agaatttaaggttcaaataaccaataaaatacctaacattga |
198 |
Q |
|
|
||||||||||||| ||||| ||| || |||| ||||||||| |||| || |||||| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
T |
12180799 |
ttaatatatttagaacaaccgacatcgaattagattgataggaatccaaaggcaaaaaagaatttaaggttcaaataaacaataaaatggctaacattga |
12180898 |
T |
 |
Q |
199 |
aatcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| ||||| ||| ||||||||| |||| |||||| |
|
|
T |
12180899 |
aattgaacttgcaaaatgaactatgactcctcattt |
12180934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 11670937 - 11671071
Alignment:
Q |
101 |
taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa |
200 |
Q |
|
|
|||||||||||| ||||| ||| | |||| ||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||| || |||||||| |
|
|
T |
11670937 |
taatatatttagaacaaccgacaacaaattacattgataaaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa |
11671036 |
T |
 |
Q |
201 |
tcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
|| ||||| | |||||||| || |||| ||||||| |
|
|
T |
11671037 |
tcgaacttgctacatgaaccatgactcctcattta |
11671071 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 3447241 - 3447325
Alignment:
Q |
151 |
gcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||| |||||||||| |||||||||||||||||| ||| |||||||||| ||||| |||||||||||| |||||||||||| |
|
|
T |
3447241 |
gcaaaaataatttaaggtacaaataaccaataaaatagctatcattgaaatcgaacttgcaacatgaactaagactcttcattta |
3447325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 21087818 - 21087687
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| || || |||| ||||||||| |||| || |||||||||||||||| | ||||||||||||||||| ||| ||||||| |
|
|
T |
21087818 |
ttaatatatttagaacaaccgaaatcgaattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataaaatagctagcattgaa |
21087719 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| ||| ||||||||||||| ||||||||||| |
|
|
T |
21087718 |
atcgaac---caacatgaactatgactcttcattt |
21087687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 11672545 - 11672652
Alignment:
Q |
101 |
taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa |
200 |
Q |
|
|
||||||||| || ||||| ||| || |||| ||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||| || |||||||| |
|
|
T |
11672545 |
taatatattcagaacaaccgacatcgaattagattgatcgaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa |
11672644 |
T |
 |
Q |
201 |
tcaaactt |
208 |
Q |
|
|
| |||||| |
|
|
T |
11672645 |
tgaaactt |
11672652 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 13993658 - 13993793
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||| ||||| ||| || |||| |||| |||||||| ||| |||||||||||||||| | ||||||||||||||||| ||| ||| || |
|
|
T |
13993658 |
ttaatatatttctaacaaccgacatcaaattagatttatagaaatttgaaggcaaaaagaatttaagatccaaataaccaataaaatggctagcatataa |
13993757 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||||| || ||||||| |||||||| ||||| |
|
|
T |
13993758 |
atcaaacttccatcatgaaccgtaactctttattta |
13993793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 36814199 - 36814105
Alignment:
Q |
102 |
aatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacatt |
196 |
Q |
|
|
||||||||||| ||||| ||| | |||| |||| |||| |||| ||| ||||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
T |
36814199 |
aatatatttagaacaaccgacattgaattagattaataggaatctgaaggcaaaaagaatttaaagttcaaataaccaataaaatagctagcatt |
36814105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 20771195 - 20771093
Alignment:
Q |
127 |
aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataact |
226 |
Q |
|
|
|||| ||||||||| |||| || |||||||||||||||| | ||||||||||||| ||| ||| |||||||||| ||| ||||||||||||| ||| |
|
|
T |
20771195 |
aattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataagatagctagcattgaaatcgaac---caacatgaactatgact |
20771099 |
T |
 |
Q |
227 |
cttcat |
232 |
Q |
|
|
|||||| |
|
|
T |
20771098 |
cttcat |
20771093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 36817346 - 36817250
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacatt |
196 |
Q |
|
|
||||||||||||| ||||| ||| | |||| |||| |||| ||| ||| |||||||||| |||| ||||||||||||||||||||| ||| |||| |
|
|
T |
36817346 |
ttaatatatttagaacaaccgacattgaattagattaataggaatttgaatgcaaaaagaaattaatgttcaaataaccaataaaatagctagcatt |
36817250 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 4033080 - 4033155
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaata |
175 |
Q |
|
|
||||||||||||| | ||| ||| || |||| ||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
T |
4033080 |
ttaatatatttagaataaccgacatcgaattaaattgatatgaatctgaaggcaaaaagaatttaaggttcaaata |
4033155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 10162955 - 10162855
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
|||||||||||| ||||| || || |||| ||||||||||||| ||| | |||||||| |||||| | ||||||||||| ||||| ||| ||||||| |
|
|
T |
10162955 |
ttaatatatttaaaacaaccaacatcaaattagattgatagaaatatgaaggtaaaaagaagttaaggatgaaataaccaat-aaatagctagcattgaa |
10162857 |
T |
 |
Q |
200 |
at |
201 |
Q |
|
|
|| |
|
|
T |
10162856 |
at |
10162855 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 12181411 - 12181456
Alignment:
Q |
142 |
aatcagaaagcaaaaagaatttaaggttcaaataaccaataaaata |
187 |
Q |
|
|
|||| ||| |||| ||||||||||||||||||||| |||||||||| |
|
|
T |
12181411 |
aatctgaaggcaacaagaatttaaggttcaaataatcaataaaata |
12181456 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 6454347 - 6454481
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| || |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
T |
6454347 |
ttaatatatttagaacaaccgacctcgaattcgattgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaattcctagcattgaa |
6454446 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| ||||||||| ||||||||| ||||||||||| |
|
|
T |
6454447 |
atcgaacttacaatatgaactatgactcttcattt |
6454481 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 13860226 - 13860087
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaa----ggttcaaataaccaataaaatacctaacat |
195 |
Q |
|
|
||||||||||||| ||||| ||| || |||| ||||||||| |||| ||| ||||||||||||||| |||||||||||| ||||||||| |||||| |
|
|
T |
13860226 |
ttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactaataaaatagctaacac |
13860127 |
T |
 |
Q |
196 |
tgaaatcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||| ||||| |||||||| ||| |||| ||||||| |
|
|
T |
13860126 |
tgaaatcgaacttgaaacatgaattatgactcctcattta |
13860087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 11664650 - 11664790
Alignment:
Q |
101 |
taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattg--- |
197 |
Q |
|
|
||||||||||| ||||| ||| || |||| |||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||| || ||||| |
|
|
T |
11664650 |
taatatatttaaaacaaccgacatcgaattagattgatagaaatctgaaggcaaaaggaattcaaggttcaaataaccaataaaatagttagcattgaac |
11664749 |
T |
 |
Q |
198 |
---aaatcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||||||| | ||||||||||| |||||||||||| |
|
|
T |
11664750 |
tcaaaatcaaacttgctacatgaactatgactcttcattta |
11664790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 13858179 - 13858318
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaag----gttcaaataaccaataaaatacctaacat |
195 |
Q |
|
|
|||||||||||| ||||| ||| || |||| ||||||||| |||| ||| |||||||||||||||| ||||||||||| | ||||||| ||| ||| |
|
|
T |
13858179 |
ttaatatatttaaaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactagtaaaatagctagcat |
13858278 |
T |
 |
Q |
196 |
tgaaatcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||| ||||| ||||||||| ||| |||| ||||||| |
|
|
T |
13858279 |
tgaaatcgaacttgcaacatgaattatgactcatcattta |
13858318 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 5157471 - 5157436
Alignment:
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||| |
|
|
T |
5157471 |
atcaaacttacaacatgaactacaactcttcattta |
5157436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 2980743 - 2980811
Alignment:
Q |
153 |
aaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaacta |
221 |
Q |
|
|
||||| |||||||||| | ||| ||||||| |||| ||||||||| ||||||||||||| || ||||| |
|
|
T |
2980743 |
aaaaataatttaaggtgcgaattaccaatacaatatttaacattgagatcaaacttacaatatcaacta |
2980811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 7305480 - 7305614
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
|||||||||||| ||||| || || |||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||| ||| ||||||| |
|
|
T |
7305480 |
ttaatatatttataacaaccgatatcgaattcgattgataggaatctgaagacaaaaggaatttaaggttcaaataaccaataaaatatctagcattgaa |
7305579 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||||||||||||||||||||||| ||||||||||| |
|
|
T |
7305580 |
atcaaacttacaacatgaactatgactcttcattt |
7305614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 7302947 - 7303069
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| |||| ||| || |||||||||||||| |||| ||| ||||||||||||| ||| |||||| ||||||||||| ||||||||| |
|
|
T |
7302947 |
ttaatatatttagaacaatcgacatcgaattcgattgataggaatctgaagataaaaagaatttaaagtttaaataatcaataaaatactcaacattgaa |
7303046 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactat |
222 |
Q |
|
|
||||||||||||||||||||||| |
|
|
T |
7303047 |
atcaaacttacaacatgaactat |
7303069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 13014706 - 13014825
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| | || |||| ||||| || |||| |||||||||||||||| ||||||||||||| || ||||||| ||| ||||||| |
|
|
T |
13014706 |
ttaatatatttagaacaaccaaaatcgaattagattgttaagaatctgaaagcaaaaagaattcaaggttcaaataatcattaaaatagctagcattgaa |
13014805 |
T |
 |
Q |
200 |
atcaaacttacaacatgaac |
219 |
Q |
|
|
||||||||| |||||||||| |
|
|
T |
13014806 |
atcaaacttgcaacatgaac |
13014825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 13013446 - 13013553
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| || |||| |||||||| |||| ||| ||||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
T |
13013446 |
ttaatatatttagaacaaccgacatcaaattaaattgataggaatctgaagataaaaagaatttaaggttcaaataacgaataaaattactagcattgaa |
13013545 |
T |
 |
Q |
200 |
atcaaact |
207 |
Q |
|
|
|||||||| |
|
|
T |
13013546 |
atcaaact |
13013553 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 39544880 - 39544793
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaata |
187 |
Q |
|
|
||||||||||||| ||||| ||| || |||| |||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |
|
|
T |
39544880 |
ttaatatatttagaacaaccgacatcaaattagattgataagaatctgaaggtaaaaagaatttaaggttcaaataaccaataaaata |
39544793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 38064340 - 38064426
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaat |
186 |
Q |
|
|
|||||||||||| ||||| ||| || |||| |||| |||| ||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
T |
38064340 |
ttaatatatttaaaacaaccgacatcgaattagattaataggaatatgaaagcaaaaagaagttaaggttaaaataaccaataaaat |
38064426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 36761942 - 36761825
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
|||||||| |||| ||||| || || |||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
T |
36761942 |
ttaatataattagaacaaccgatatcgaattcgattgataggaatctgaacgcaaaaagaatttaaatttcaaataaccaataaaatagctagcattgaa |
36761843 |
T |
 |
Q |
200 |
atcaaacttacaacatga |
217 |
Q |
|
|
|||||||||||||||||| |
|
|
T |
36761842 |
atcaaacttacaacatga |
36761825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 40604067 - 40603935
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| || || ||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
T |
40604067 |
ttaatatatttagaacaaccgacatcgaaatcgattgatagtaatttgaagataaaaagaatttaaggtttaaataaccaataaaatacctaacatcgaa |
40603968 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcat |
232 |
Q |
|
|
|| |||||||||||| |||||| | ||||||| |
|
|
T |
40603967 |
atggaacttacaacataaactatgattcttcat |
40603935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 22497847 - 22497982
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||||||| || || | ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| || || || |
|
|
T |
22497847 |
ttaatatatttagaacaactgacatcgaactagattgatagaaatttgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttattatgtaa |
22497946 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||||| | ||||||||||| |||| ||||||| |
|
|
T |
22497947 |
atcaaacttgctacatgaactatgactcctcattta |
22497982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 49058406 - 49058287
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||||||| || |||| |||||| | | ||| ||| ||||||||||||||| ||| ||||||||||||||||| |||||||| || |
|
|
T |
49058406 |
ttaatatatttagaacaactgacatcgaattagattgacaaatatctgaaggcaaaaagaatttaatgttaaaataaccaataaaatagctaacattaaa |
49058307 |
T |
 |
Q |
200 |
atcaaacttacaacatgaac |
219 |
Q |
|
|
||| ||||| |||||||||| |
|
|
T |
49058306 |
atcgaacttgcaacatgaac |
49058287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 42430942 - 42430808
Alignment:
Q |
101 |
taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa |
200 |
Q |
|
|
|||||||||||| ||||| || || |||| |||||||||||||| ||| ||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
T |
42430942 |
taatatatttagaacaaccgaaatcgaattagattgatagaaatctgaaggcacaaagaattcaaggttcaaataatcaataaaataattagcattgaaa |
42430843 |
T |
 |
Q |
201 |
tcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
|| || || | ||||||||||| | || ||||||| |
|
|
T |
42430842 |
tcgaatttgctacatgaactatgattcctcattta |
42430808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 3071609 - 3071731
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||| ||| || |||| ||||||||| |||| || |||||||||||| || ||||||||||||||||||||| ||| ||||||| |
|
|
T |
3071609 |
ttaatatatttagagcaatcgacatcaaattagattgataggaatctaaaggcaaaaagaattaaaagttcaaataaccaataaaatagctagcattgaa |
3071708 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactat |
222 |
Q |
|
|
|| ||||| |||||||||||| |
|
|
T |
3071709 |
attgaacttgtaacatgaactat |
3071731 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 38705709 - 38705645
Alignment:
Q |
154 |
aaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaa |
218 |
Q |
|
|
||||||||||||| |||||||||||||||||||| || ||||||||| || || ||||||||| |
|
|
T |
38705709 |
aaaagaatttaagattcaaataaccaataaaatagttagcattgaaattgaatttgcaacatgaa |
38705645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 49089695 - 49089560
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| | |||| ||||||||| |||| || |||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
T |
49089695 |
ttaatatatttagaacaaccgacattgaattagattgataggaatcttaaggcaaaaagaatttaagagtcaaataaccaataaaatagctagcattgaa |
49089596 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||||| |||||| ||||| ||||| ||||||| |
|
|
T |
49089595 |
atcaaacttgcaacataaactacaactcctcattta |
49089560 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 3964829 - 3964694
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||| ||||| ||| || | || |||| |||||||| ||| |||||||||||||||| | ||||||||||||||||| ||| ||| || |
|
|
T |
3964829 |
ttaatatatttccaacaaccgacatcaagttagattaatagaaatttgaaggcaaaaagaatttaagatccaaataaccaataaaatggctagcatataa |
3964730 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
||||||||| || ||||||| |||||||| ||||| |
|
|
T |
3964729 |
atcaaacttccatcatgaaccgtaactctttattta |
3964694 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 1520383 - 1520517
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| | | || |||||||||||||| | || || | |||| |||| |||||||||||||||||||||||||||||||||| || |
|
|
T |
1520383 |
ttaatatatttagaacaaccgtcatcgaattcgattgataggagtcttaaggtaaaaggaatctaaggttcaaataaccaataaaatacctaacattaaa |
1520482 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| |||||| ||||| ||||||||||||| |||| |
|
|
T |
1520483 |
atcgaacttataacataaactataactctttattt |
1520517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 48572671 - 48572806
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| | | || |||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| || |||| || |
|
|
T |
48572671 |
ttaatatatttagaacaaccggcatcaaattagattgataggaatcagaagacaaaaaaaatttaaggttcaaataaccaataaaatagttagcattaaa |
48572770 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattta |
235 |
Q |
|
|
|| ||||| |||||||||||| |||| ||||||| |
|
|
T |
48572771 |
attgaacttgcaacatgaactacgactcctcattta |
48572806 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 41397661 - 41397792
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaa----ggttcaaataaccaataaaatacctaacat |
195 |
Q |
|
|
||||||||||||| ||||| ||| || |||| ||||||||| |||| ||| ||||||||||||||| |||||| |||||||||||||| ||| ||| |
|
|
T |
41397661 |
ttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcatgtaaccaataaaatagctagcat |
41397760 |
T |
 |
Q |
196 |
tgaaatcaaacttacaacatgaactataactc |
227 |
Q |
|
|
||||||| ||||| ||||||||| ||| |||| |
|
|
T |
41397761 |
tgaaatcgaactttcaacatgaattatgactc |
41397792 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 30879421 - 30879542
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| | |||| |||||||| ||| ||| ||||||||||||||||||| ||||||||||| ||||| ||| ||||||| |
|
|
T |
30879421 |
ttaatatatttagaacaaccgactttaaattagattgataacaatttgaaggcaaaaagaatttaaggtttaaataaccaat-aaatagctagcattgaa |
30879519 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactat |
222 |
Q |
|
|
||| ||||| |||||| |||||| |
|
|
T |
30879520 |
atcgaacttgcaacataaactat |
30879542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 22112196 - 22112330
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| || |||| |||| ||| |||| || | ||||||||||||||||||||||||| ||||| ||| ||| ||| || |
|
|
T |
22112196 |
ttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataatataattaaaattaaa |
22112295 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| ||||| ||| |||| | || |||| |||||| |
|
|
T |
22112296 |
atcgaacttgcaaaatgatccatgactcatcattt |
22112330 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 40494255 - 40494121
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| ||||| ||| || |||| |||| ||| |||| || | ||||||||||||||||||||||||| ||||| ||| ||| ||| || |
|
|
T |
40494255 |
ttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataatataattaaaattaaa |
40494156 |
T |
 |
Q |
200 |
atcaaacttacaacatgaactataactcttcattt |
234 |
Q |
|
|
||| ||||| ||| |||| | || |||| |||||| |
|
|
T |
40494155 |
atcgaacttgcaaaatgatccatgactcatcattt |
40494121 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 22130467 - 22130597
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa---agaatttaaggttcaaataaccaataaaatacctaacatt |
196 |
Q |
|
|
||||||||||| ||||| ||| || |||| ||||||||| |||| ||| |||||| | |||| ||||||||||||| |||||| ||| ||| ||| |
|
|
T |
22130467 |
ttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaacaaaaaattaaaggttcaaataatcaataatatagctagaatt |
22130566 |
T |
 |
Q |
197 |
gaaatcaaacttacaacatgaactataactc |
227 |
Q |
|
|
|||||| ||||| ||||||||| ||| |||| |
|
|
T |
22130567 |
gaaatcgaacttgcaacatgaagtatgactc |
22130597 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 40500639 - 40500509
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa---agaatttaaggttcaaataaccaataaaatacctaacatt |
196 |
Q |
|
|
||||||||||| ||||| ||| || |||| ||||||||| |||| ||| |||||| | |||| ||||||||||||| |||||| ||| ||| ||| |
|
|
T |
40500639 |
ttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaacaaaaaattaaaggttcaaataatcaataatatagctagaatt |
40500540 |
T |
 |
Q |
197 |
gaaatcaaacttacaacatgaactataactc |
227 |
Q |
|
|
|||||| ||||| ||||||||| ||| |||| |
|
|
T |
40500539 |
gaaatcgaacttgcaacatgaagtatgactc |
40500509 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 14389867 - 14389768
Alignment:
Q |
100 |
ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa |
199 |
Q |
|
|
||||||||||||| |||| ||| | |||||||||||||| |||||||| ||||||| |||||||| | |||||||||||||||||||||| ||||||| |
|
|
T |
14389867 |
ttaatatatttagaacaatcgacattgaattcgattgataggaatcagaaggcaaaaataatttaagatacaaataaccaataaaatacctagcattgaa |
14389768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 35549710 - 35549794
Alignment:
Q |
127 |
aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttaca |
211 |
Q |
|
|
||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||| |
|
|
T |
35549710 |
aattccattgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaataggtagcattaaaatcgaacttaca |
35549794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 5813399 - 5813523
Alignment:
Q |
103 |
atatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatc |
202 |
Q |
|
|
|||||||||| |||| ||| || |||| ||||||||| ||| || | |||||||||||||| |||||||||||||||||||| || |||| |||| |
|
|
T |
5813399 |
atatatttagaacaatggacttcgaattagattgataggaatttgagggaaaaaagaatttaagattcaaataaccaataaaatagatagcattaaaatt |
5813498 |
T |
 |
Q |
203 |
aaacttacaacatgaactataactc |
227 |
Q |
|
|
||||| |||||| ||||||||||| |
|
|
T |
5813499 |
gaacttgcaacataaactataactc |
5813523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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