View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_low_2 (Length: 728)

Name: NF0852_low_2
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_low_2
NF0852_low_2
[»] chr5 (8 HSPs)
chr5 (30-650)||(10293416-10294033)
chr5 (412-650)||(10301282-10301520)
chr5 (288-396)||(2078533-2078636)
chr5 (31-85)||(10301766-10301820)
chr5 (292-345)||(25160-25213)
chr5 (301-373)||(39668792-39668864)
chr5 (297-373)||(32489109-32489185)
chr5 (314-396)||(11069358-11069435)
[»] chr2 (10 HSPs)
chr2 (289-396)||(1648008-1648110)
chr2 (288-373)||(37520590-37520675)
chr2 (288-396)||(16290742-16290845)
chr2 (289-373)||(8561081-8561165)
chr2 (296-373)||(11992914-11992991)
chr2 (487-547)||(10697822-10697882)
chr2 (325-373)||(23766914-23766962)
chr2 (325-373)||(23796107-23796155)
chr2 (487-546)||(43821139-43821199)
chr2 (289-373)||(45329652-45329736)
[»] chr1 (14 HSPs)
chr1 (286-396)||(49350466-49350571)
chr1 (288-394)||(32079304-32079405)
chr1 (293-397)||(4001850-4001949)
chr1 (288-396)||(52920978-52921081)
chr1 (291-396)||(49527430-49527530)
chr1 (289-373)||(51850761-51850845)
chr1 (314-373)||(8670818-8670877)
chr1 (296-369)||(9599915-9599988)
chr1 (299-367)||(52815018-52815086)
chr1 (291-349)||(1290227-1290285)
chr1 (288-349)||(16538788-16538849)
chr1 (487-531)||(6108854-6108898)
chr1 (289-373)||(15424522-15424604)
chr1 (301-373)||(6985626-6985696)
[»] chr8 (5 HSPs)
chr8 (289-373)||(4061809-4061893)
chr8 (289-373)||(16008450-16008534)
chr8 (288-396)||(15218276-15218379)
chr8 (304-345)||(29520506-29520547)
chr8 (288-349)||(35249776-35249837)
[»] chr3 (6 HSPs)
chr3 (289-372)||(51450778-51450861)
chr3 (288-396)||(31566254-31566357)
chr3 (289-373)||(52136315-52136399)
chr3 (288-394)||(7023146-7023247)
chr3 (315-373)||(9256285-9256343)
chr3 (305-367)||(27215640-27215702)
[»] chr6 (2 HSPs)
chr6 (287-373)||(20430580-20430666)
chr6 (299-394)||(6079585-6079675)
[»] scaffold0279 (1 HSPs)
scaffold0279 (289-396)||(18383-18485)
[»] scaffold0024 (1 HSPs)
scaffold0024 (293-349)||(48294-48350)
[»] chr4 (3 HSPs)
chr4 (288-338)||(16000229-16000279)
chr4 (301-373)||(54529556-54529628)
chr4 (513-546)||(16486534-16486567)
[»] scaffold0245 (1 HSPs)
scaffold0245 (291-349)||(16632-16690)
[»] chr7 (1 HSPs)
chr7 (317-373)||(30089118-30089174)
[»] scaffold0001 (1 HSPs)
scaffold0001 (321-396)||(440116-440186)


Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 30 - 650
Target Start/End: Complemental strand, 10294033 - 10293416
Alignment:
Q  30 gaatgatctctcattagatgtgattttttatggaacaattgtagcatagatagtttaatacatgcatctataattttctatgtcagaatattgaatattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10294033 gaatgatctctcattagatgtgattttttatggaacaattgtagcatagatagtttaatacatgcatctatgattttctatgtcagaatattgaatattg 10293934  T
Q  130 agtttatatcattgagtatatctagnnnnnnntcattgagaatatctctcgatgtttctttattgatgcattgtgaatttgagggggaggtgatagataa 229  Q
    |||||||||||||||||||||||||       ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10293933 agtttatatcattgagtatatctagaaaaaaatcattgagaatgtctctcgatgtttctt-attgatgcattgtgaatttgagggggaggtgatagataa 10293835  T
Q  230 tagggcttatgttattgagttcnnnnnnnct---tctatttttctaagttagtagtctagttaatcctgccaaggccggtcccaaatccgggtaaaagga 326  Q
    |||||||||||||||||||||         |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  10293834 tagggcttatgttattgagttttttttttttctctctctttttctaagttagtagtctagttaatcctgccaaggccggtcccaaactcgggtaaaagga 10293735  T
Q  327 gagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatggaccaaaaagttagtacttagtagtctagtccattag 426  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  10293734 gagggttgtgttaggcctcgacatgcaacgtaaaactttgtcgaatcgaattcgtatgacatggaccaaaaatttagtacttagtagtctagtccattag 10293635  T
Q  427 gtgggaggttgggtatctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttctaacaaagagaaaaatttaacataataatta 526  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||    
T  10293634 gtgggaggttgggtagctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttccgac--agagaaaaatttaacataataatta 10293537  T
Q  527 acatactaatatttatcattatnnnnnnnngtctaatccatcatgtattactctatattatcttgtaacccttacttcaataagtcatgttaattgtatt 626  Q
    ||||||||| |||| |||||||        ||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  10293536 acatactaacatttgtcattataaaaaaatgtctaatc---catgtattactctatattatcttgtaacccttacttcaataaatcatgctaattgtatt 10293440  T
Q  627 ttattgaaaccttagccccctttg 650  Q
    ||||||||||||||||||||||||    
T  10293439 ttattgaaaccttagccccctttg 10293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 412 - 650
Target Start/End: Complemental strand, 10301520 - 10301282
Alignment:
Q  412 agtctagtccattaggtgggaggttgggtatctcaatcggtttgaattaagggttaggcagttggaggtccaatattcaagttctaacaaagagaaaaat 511  Q
    ||||| ||||||| |||||| ||||||||| ||||||||||| || |||| || |||| || |||||||||||  |||||||||| |||| |||||||||    
T  10301520 agtctggtccatttggtggggggttgggtagctcaatcggttggagttaaagggtagggagctggaggtccaaagttcaagttctgacaaggagaaaaat 10301421  T
Q  512 ttaacataataattaacatactaatatttatcattatnnnnnnnngtctaatccatcatgtattactctatattatcttgtaacccttacttcaataagt 611  Q
     ||||||||||||||||||||||| ||||||||||||        || |||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  10301420 ctaacataataattaacatactaacatttatcattattaaaaaaagtttaatccatcatgtattactctatattatcttgtaactcttactagaataagt 10301321  T
Q  612 catgttaattgtattttattgaaaccttagccccctttg 650  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  10301320 catgctaattgtattttattgaaaccttagcctcctttg 10301282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 2078636 - 2078533
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||   |||||||||||||||||     |||||||||||||    
T  2078636 taatcctgccaaggccggtcccaagcccggataaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcg-----aatctctatgaca 2078542  T
Q  388 tggaccaaa 396  Q
    |||||||||    
T  2078541 tggaccaaa 2078533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 10301820 - 10301766
Alignment:
Q  31 aatgatctctcattagatgtgattttttatggaacaattgtagcatagatagttt 85  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  10301820 aatgatctcatattagatgtgattttttatggaacagttgtagcatagatagttt 10301766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 25160 - 25213
Alignment:
Q  292 cctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctc 345  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  25160 cctgccaaggccggtcccaaatccgggtaaaaggagagaattgtgtcaggcctc 25213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 39668864 - 39668792
Alignment:
Q  301 gccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||  |||||||||||| |||||||||||||| ||||||||   || ||||||||||||||||||    
T  39668864 gccggtcccaagcccgggtaaaaggtgagggttgtgttagtcctcgacagccaacgtaaaactttgtcgaatc 39668792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 32489109 - 32489185
Alignment:
Q  297 caaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||| ||||   || ||||||||||||||||||||||| ||||||||   || ||||||||||||||||||    
T  32489109 caaggccggttccaagctcgagtaaaaggagagggttgtgttagacctcgacagtcaacgtaaaactttgtcgaatc 32489185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 11069435 - 11069358
Alignment:
Q  314 ccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatggaccaaa 396  Q
    |||||||||||||||| ||||||||||||||| |||   || | |||||||||     |||||||||||||||||||||||||    
T  11069435 ccgggtaaaaggagagcgttgtgttaggcctcaacaaccaacgcaaaactttg-----tcgaatctctatgacatggaccaaa 11069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 1648008 - 1648110
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacat 388  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||   || |||||||||||     |||||||||||||||||    
T  1648008 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttg-----tcgaatctctatgacat 1648102  T
Q  389 ggaccaaa 396  Q
    ||||||||    
T  1648103 ggaccaaa 1648110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 288 - 373
Target Start/End: Original strand, 37520590 - 37520675
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  37520590 taatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatc 37520675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 16290742 - 16290845
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |   || |||||||||||     ||||||||||||||||    
T  16290742 taatcctgccaaggccggtcccaagcccgggtaaaaggaaagggttgtgttaggcctcgatagccaacgtaaaactttg-----tcgaatctctatgaca 16290836  T
Q  388 tggaccaaa 396  Q
    |||||||||    
T  16290837 tggaccaaa 16290845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 8561165 - 8561081
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||   || |||||||||||| |||||    
T  8561165 aatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatc 8561081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 11992914 - 11992991
Alignment:
Q  296 ccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||   ||  |||||||||||||||||    
T  11992914 ccaaggccggtcccaagcccgggtaaaagaagagggttgtgttaggcctcgacagccaacataaaactttgtcgaatc 11992991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 10697822 - 10697882
Alignment:
Q  487 ttcaagttctaacaaagagaaaaatttaacataataattaacatactaatatttatcatta 547  Q
    ||||| ||||||||||||||||||  |||||||  || ||| |||||||||||||||||||    
T  10697822 ttcaaattctaacaaagagaaaaaactaacatagcaactaatatactaatatttatcatta 10697882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 23766962 - 23766914
Alignment:
Q  325 gagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||||   || ||||||||||||||||||    
T  23766962 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatc 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 23796155 - 23796107
Alignment:
Q  325 gagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||||   || ||||||||||||||||||    
T  23796155 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatc 23796107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 546
Target Start/End: Complemental strand, 43821199 - 43821139
Alignment:
Q  487 ttcaagttctaaca-aagagaaaaatttaacataataattaacatactaatatttatcatt 546  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||| || |||||||    
T  43821199 ttcaagtcctaacagaaaagaaaaaattaacataataattaacatactaacatatatcatt 43821139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 45329736 - 45329652
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||| ||| |||||||| |||||  | | |||||||||||||||||||||||| |||||||   || |||||||||| |||||||    
T  45329736 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttatcgaatc 45329652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 49350571 - 49350466
Alignment:
Q  286 gttaatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatga 385  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||   || ||||||||||||||     |||||||||||    
T  49350571 gttaatcctgccaaggccggtcccaagcccaggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcg-----aatctctatga 49350477  T
Q  386 catggaccaaa 396  Q
    |||||||||||    
T  49350476 catggaccaaa 49350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 288 - 394
Target Start/End: Original strand, 32079304 - 32079405
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||   || |||||||||||     ||||||||||||||||    
T  32079304 taatcctgccaaggccggtctcaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttg-----tcgaatctctatgaca 32079398  T
Q  388 tggacca 394  Q
    |||||||    
T  32079399 tggacca 32079405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 397
Target Start/End: Original strand, 4001850 - 4001949
Alignment:
Q  293 ctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatggac 392  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||   || |||||||||||     |||||||||||||||||||||    
T  4001850 ctgccaaggccggccccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttg-----tcgaatctctatgacatggac 4001944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 52920978 - 52921081
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||   ||  ||||||||||     ||||||||||||||||    
T  52920978 taatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttg-----tcgaatctctatgaca 52921072  T
Q  388 tggaccaaa 396  Q
    |||||||||    
T  52921073 tggaccaaa 52921081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 49527530 - 49527430
Alignment:
Q  291 tcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatgg 390  Q
    |||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||   || |||||||||||     | |||||||||||||||||    
T  49527530 tcctgccaaggccggtcccaagctcgggtaaaaggagaggattgtgttaggcctcgacagccaacgtaaaactttg-----ttgaatctctatgacatgg 49527436  T
Q  391 accaaa 396  Q
    ||||||    
T  49527435 accaaa 49527430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 51850761 - 51850845
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||  ||  |||||||| ||||||||    
T  51850761 aatcctgccaaggccagtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatc 51850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 8670877 - 8670818
Alignment:
Q  314 ccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  8670877 ccgggtaaaaggagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatc 8670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 9599915 - 9599988
Alignment:
Q  296 ccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcg 369  Q
    ||||||| ||||||||   |||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  9599915 ccaaggcgggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcg 9599988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 52815018 - 52815086
Alignment:
Q  299 aggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgt 367  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||   || ||||||||||||    
T  52815018 aggccggtcccaaactcgggtaaaaggagagggttgtgttaggccttgacaaccaacgtaaaactttgt 52815086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 1290285 - 1290227
Alignment:
Q  291 tcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgaca 349  Q
    |||||||||||||||||||||  ||||||||||  |||||||||||| |||||| ||||    
T  1290285 tcctgccaaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgaca 1290227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 16538849 - 16538788
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgaca 349  Q
    |||||||||||||| |||||||||   | |||||||||||| ||||||||||| ||||||||    
T  16538849 taatcctgccaaggtcggtcccaagctctggtaaaaggagatggttgtgttagacctcgaca 16538788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 6108898 - 6108854
Alignment:
Q  487 ttcaagttctaacaaagagaaaaatttaacataataattaacata 531  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  6108898 ttcaagttctgacaaagagaaaaaactaacataataattaacata 6108854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 15424604 - 15424522
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||| ||||||||||||||||  |||| |||||||||||| |||||||||||| |||||   || ||||||||||||| ||||    
T  15424604 aatcctaccaaggccggtcccaag-ccggataaaaggagagg-ttgtgttaggccacgacaaccaacgtaaaactttgtcaaatc 15424522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 6985696 - 6985626
Alignment:
Q  301 gccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||  |||| | ||||||||||||||||||||||  |||||   || ||||||||||||||||||    
T  6985696 gccggtcccaagcccggatgaaaggagagggttgtgttaggc--cgacagccaacgtaaaactttgtcgaatc 6985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 4061809 - 4061893
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || ||||||||||||| ||||    
T  4061809 aatcctgccaaggccggtcccaaacccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcaaatc 4061893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 16008534 - 16008450
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||   || |||||||||||| |||||    
T  16008534 aatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatc 16008450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 15218379 - 15218276
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    |||||||||||||| |||||| || | ||||||||||||||||||||||||| ||||||| |   || |||||| ||||     ||||||||||||||||    
T  15218379 taatcctgccaaggtcggtcctaagttcgggtaaaaggagagggttgtgttaagcctcgatagtcaacgtaaaattttg-----tcgaatctctatgaca 15218285  T
Q  388 tggaccaaa 396  Q
    |||||||||    
T  15218284 tggaccaaa 15218276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 29520506 - 29520547
Alignment:
Q  304 ggtcccaaatccgggtaaaaggagagggttgtgttaggcctc 345  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  29520506 ggtcccaagcccgggtaaaaggagagggttgtgttaggcctc 29520547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 35249776 - 35249837
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgaca 349  Q
    |||||||| |||| | ||||||||  ||| ||||||| ||||||||||| ||||||||||||    
T  35249776 taatcctgtcaagactggtcccaagcccgcgtaaaagaagagggttgtgataggcctcgaca 35249837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 51450861 - 51450778
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaat 372  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  51450861 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaat 51450778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 31566357 - 31566254
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||   || ||| |||||||     | ||||||||||||||    
T  31566357 taatcctgccaaagccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtagaactttg-----tagaatctctatgaca 31566263  T
Q  388 tggaccaaa 396  Q
    |||||||||    
T  31566262 tggaccaaa 31566254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 52136315 - 52136399
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| || |   || ||||||||||||||||||    
T  52136315 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatc 52136399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 288 - 394
Target Start/End: Original strand, 7023146 - 7023247
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgaca 387  Q
    ||||||||| |||| |||||||||  || ||||||||||||||||||||||||||||| |||   || ||||||||||     ||| |||||||||||||    
T  7023146 taatcctgctaaggtcggtcccaagcccaggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaacttt-----atcaaatctctatgaca 7023240  T
Q  388 tggacca 394  Q
    |||||||    
T  7023241 tggacca 7023247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 9256285 - 9256343
Alignment:
Q  315 cgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||||||||||||||||||| |||   || |||||| |||||||||||    
T  9256285 cgggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaattttgtcgaatc 9256343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 27215702 - 27215640
Alignment:
Q  305 gtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgt 367  Q
    ||||||| ||||||||||||| ||||||||||| ||||||| | | | || ||||||||||||    
T  27215702 gtcccaagtccgggtaaaaggtgagggttgtgtcaggcctcaataagcaacgtaaaactttgt 27215640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 20430666 - 20430580
Alignment:
Q  287 ttaatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||   || |||||||||||| |||||    
T  20430666 ttaatcctgccaaggccggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatc 20430580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 6079585 - 6079675
Alignment:
Q  299 aggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatggacca 394  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||||   || |||||||||||     |||||||||||||||||||||||    
T  6079585 aggccggtcccaagcccgggtaaaaggagagggttgcgttaggcctcgacagtcaacgtaaaactttg-----tcgaatctctatgacatggacca 6079675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 18383 - 18485
Alignment:
Q  289 aatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacat 388  Q
    ||||||||||| |||||||||||  ||||||||||||||| |||||||||| |||||||||   || |||||||||||     |||||||||||||||||    
T  18383 aatcctgccaaagccggtcccaagcccgggtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttg-----tcgaatctctatgacat 18477  T
Q  389 ggaccaaa 396  Q
    ||||||||    
T  18478 ggaccaaa 18485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 48350 - 48294
Alignment:
Q  293 ctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgaca 349  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  48350 ctgccaaggccggtcccaagtccgggtaaaaggagagggtttcgttaggcctcgaca 48294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 16000229 - 16000279
Alignment:
Q  288 taatcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgtt 338  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  16000229 taatcctaccaagaccggtcccaagtccgggtaaaaggagagggttgtgtt 16000279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 54529556 - 54529628
Alignment:
Q  301 gccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    |||||||||||  | |||||||| |||||||||||||||||||||||||   || |||| |||||||||||||    
T  54529556 gccggtcccaaggctgggtaaaaagagagggttgtgttaggcctcgacagccaacgtaacactttgtcgaatc 54529628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 16486567 - 16486534
Alignment:
Q  513 taacataataattaacatactaatatttatcatt 546  Q
    |||||||| |||||||||||||||||||||||||    
T  16486567 taacataacaattaacatactaatatttatcatt 16486534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 16690 - 16632
Alignment:
Q  291 tcctgccaaggccggtcccaaatccgggtaaaaggagagggttgtgttaggcctcgaca 349  Q
    |||||||||||||||||||||  ||||||||||  |||||||||||| |||||| ||||    
T  16690 tcctgccaaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgaca 16632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 30089118 - 30089174
Alignment:
Q  317 ggtaaaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatc 373  Q
    ||||||||||||||||||| ||| | |||||||  ||| ||||||||||||||||||    
T  30089118 ggtaaaaggagagggttgtattaagtctcgacagctaacgtaaaactttgtcgaatc 30089174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 440116 - 440186
Alignment:
Q  321 aaaggagagggttgtgttaggcctcgacatgtaaagtaaaactttgtcgaatcgaatctctatgacatggaccaaa 396  Q
    |||||||||| ||||||||||||||||||   || |||||||||||     || ||||||||||||||||||||||    
T  440116 aaaggagaggattgtgttaggcctcgacagccaacgtaaaactttg-----tcaaatctctatgacatggaccaaa 440186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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