View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_low_24 (Length: 372)

Name: NF0852_low_24
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_low_24
NF0852_low_24
[»] chr1 (4 HSPs)
chr1 (30-255)||(44128283-44128508)
chr1 (30-255)||(44132488-44132713)
chr1 (30-255)||(44140910-44141135)
chr1 (256-362)||(3922211-3922317)
[»] chr5 (7 HSPs)
chr5 (30-135)||(1504807-1504911)
chr5 (182-255)||(1504469-1504542)
chr5 (188-255)||(1491705-1491772)
chr5 (40-79)||(1482078-1482117)
chr5 (187-255)||(1477704-1477772)
chr5 (183-255)||(1481815-1481887)
chr5 (40-79)||(1477884-1477923)
[»] chr7 (11 HSPs)
chr7 (33-105)||(46707179-46707251)
chr7 (187-255)||(5290081-5290149)
chr7 (187-255)||(5302166-5302234)
chr7 (187-255)||(5283978-5284046)
chr7 (187-255)||(5309803-5309871)
chr7 (187-255)||(5314620-5314688)
chr7 (30-79)||(5310282-5310331)
chr7 (31-79)||(5284193-5284241)
chr7 (31-79)||(5314996-5315044)
chr7 (31-79)||(5289886-5289934)
chr7 (31-79)||(5302381-5302429)
[»] chr6 (1 HSPs)
chr6 (256-331)||(34958329-34958404)
[»] chr3 (3 HSPs)
chr3 (191-247)||(37863716-37863772)
chr3 (191-247)||(37859726-37859782)
chr3 (191-247)||(39029635-39029691)
[»] chr2 (1 HSPs)
chr2 (34-75)||(24163982-24164023)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 44128508 - 44128283
Alignment:
Q  30 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44128508 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44128409  T
Q  130 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128408 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44128309  T
Q  230 gtgttcactatttgtgattttaaagt 255  Q
    ||||||||||||||||||||| ||||    
T  44128308 gtgttcactatttgtgattttgaagt 44128283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 44132713 - 44132488
Alignment:
Q  30 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44132713 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44132614  T
Q  130 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132613 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44132514  T
Q  230 gtgttcactatttgtgattttaaagt 255  Q
    ||||||||||||||||||||| ||||    
T  44132513 gtgttcactatttgtgattttgaagt 44132488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 44141135 - 44140910
Alignment:
Q  30 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44141135 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44141036  T
Q  130 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141035 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44140936  T
Q  230 gtgttcactatttgtgattttaaagt 255  Q
    ||||||||||||||||||||| ||||    
T  44140935 gtgttcactatttgtgattttgaagt 44140910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 3922317 - 3922211
Alignment:
Q  256 gaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctgatcagttggagggatccaagagctacatttatatttttggtg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3922317 gaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctgatcagttggagggatccaagagctacatttatatttttggtg 3922218  T
Q  356 ttctgtg 362  Q
    |||||||    
T  3922217 ttctgtg 3922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 1504911 - 1504807
Alignment:
Q  30 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 129  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  1504911 ctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattatgaagagatgatattagttcaac-aaatttgggtgatacgaaa 1504813  T
Q  130 ccaatg 135  Q
     |||||    
T  1504812 tcaatg 1504807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 1504542 - 1504469
Alignment:
Q  182 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  1504542 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagt 1504469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 1491772 - 1491705
Alignment:
Q  188 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagt 1491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 1482117 - 1482078
Alignment:
Q  40 tacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1482117 tacatgtatctcctcttgatcatagatttatcacctgaag 1482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 1477772 - 1477704
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    ||||||||||||||||||| ||||| ||||| ||||||   ||||| ||||| ||||||||||| ||||    
T  1477772 aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagt 1477704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 1481887 - 1481815
Alignment:
Q  183 aaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    || || ||||| ||||||||||||||||    
T  1481887 aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagt 1481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 1477923 - 1477884
Alignment:
Q  40 tacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  1477923 tacatgtatctcctcttgatcatggatttatcacctgaag 1477884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 46707179 - 46707251
Alignment:
Q  33 tgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagtt 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  46707179 tgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaattatgataggatgatattagtt 46707251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 5290081 - 5290149
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  5290081 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagt 5290149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5302234 - 5302166
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  5302234 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagt 5302166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5284046 - 5283978
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  5284046 aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagt 5283978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5309871 - 5309803
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||||||||    
T  5309871 aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagt 5309803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5314688 - 5314620
Alignment:
Q  187 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagt 255  Q
    |||||||||||||||| || ||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  5314688 aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagt 5314620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 5310331 - 5310282
Alignment:
Q  30 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5310331 ctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 5284241 - 5284193
Alignment:
Q  31 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5284241 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 5315044 - 5314996
Alignment:
Q  31 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5315044 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5314996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 5289886 - 5289934
Alignment:
Q  31 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5289886 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 5302429 - 5302381
Alignment:
Q  31 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 79  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5302429 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 34958329 - 34958404
Alignment:
Q  256 gaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctgatcagttggagggatcca 331  Q
    ||||| |||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||||||||    
T  34958329 gaatgcacaaaaaagggttgatcaattagctaccattttagaaaagctacaatttctgatcagttggagggatcca 34958404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 37863716 - 37863772
Alignment:
Q  191 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 247  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgat 37863772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  191 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 247  Q
    |||||||||||| || ||||| |||||||| |||||||| |||||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  191 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 247  Q
    |||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 24163982 - 24164023
Alignment:
Q  34 gttaggtacatatatctcctcttgatcatagatttatcacct 75  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  24163982 gttaggtacatgtatctcctcttgatcatagttttatcacct 24164023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 596 times since January 2019
Visitors: 6130