View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_26 (Length: 344)
Name: NF0852_low_26
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1560889 - 1561146
Alignment:
| Q |
1 |
cgggaggtttagagttgacaatattcatccaaaattaatgcttgatctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaa |
100 |
Q |
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| T |
1560889 |
cgggaggtttagagttgacaatattcatccaaaattaatgcttgatctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaa |
1560988 |
T |
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| Q |
101 |
aacacaga--acacacaaccagctgatatcagagatatattatagtaaatatgcatatacacataaatgaagatactactcttgttcagtttccttgaac |
198 |
Q |
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| T |
1560989 |
aacacagagaacacacaaccagctgatatcagagatatattatagtaaatatgcatatacacataaatgaagatactactcttgttcagtttccttgaac |
1561088 |
T |
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| Q |
199 |
ttcatattgattattcacttctcaagttagtaggattcaaaattgaacatgaaagatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1561089 |
ttcatattgattattcacttctcaagttagtaggattcaaaattgaacatgaaagatt |
1561146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 2091400 - 2091596
Alignment:
| Q |
42 |
ttgatctgttctattcttgttcaaaatgtcgacaatttcccttgcagggtttcttgtaaaacacagaacacacaaccagctgatatcagagatatattat |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2091400 |
ttgatctgttctattcttgttcaaaatgtcgacaatttcggttgcagggtttcctgtaagacacagaacacacaaccagctgatatcagagatatattat |
2091499 |
T |
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| Q |
142 |
agtaaatatgcatatacacataaatgaag----------------atactactcttgttcagtttccttgaacttcatattgattattcacttctca |
222 |
Q |
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| T |
2091500 |
agtaaatatgcatatacacataaatgaagattatgtttatagtttatactactcttgttcagtttccttgaacttcatattgattattcacttctca |
2091596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 1568848 - 1568880
Alignment:
| Q |
106 |
agaacacacaaccagctgatatcagagatatat |
138 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
1568848 |
agaacacacaaccaggtgatatcagagatatat |
1568880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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