View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_31 (Length: 315)
Name: NF0852_low_31
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 42202113 - 42202395
Alignment:
| Q |
7 |
tccaacaatatctaaataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttct |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42202113 |
tccaaccatatctaaataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaatttccaattcagtaccatttct |
42202212 |
T |
|
| Q |
107 |
ccttttcctgtttannnnnnnaatctccaatttggacagtcttaggaaagttaggaactcaattacctgaactacaaaacaaggattcattttataaatt |
206 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42202213 |
ccttttcctgtttatttttttaatctctaatttggacagtcttaggaaagttaggaactcaattacctgaactacaaaacaaggattcattttataaatt |
42202312 |
T |
|
| Q |
207 |
tagacattttcatttcctttgtaaactccaaaaaatcaattttcactctttctttctacacaaaatattttctttctattttct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42202313 |
tagacattttcatttcctttgtaaactccaaaaaatcaattttcactctttctttctac-caaaatattttctttctattttct |
42202395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 12523251 - 12523383
Alignment:
| Q |
21 |
aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12523251 |
aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta |
12523350 |
T |
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| Q |
121 |
nnnnnnnaatctccaatttggacagtcttagga |
153 |
Q |
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| T |
12523351 |
tttttttaatctccaatttggacggtcttagga |
12523383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 12523418 - 12523482
Alignment:
| Q |
226 |
tgtaaactccaaaaaatcaattttcactctttctttctacacaaaatattttctttctattttct |
290 |
Q |
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| T |
12523418 |
tgtaaactccaaaaattcaattttcactctttctttctatacaatatattttctttctattttct |
12523482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 32060129 - 32060261
Alignment:
| Q |
21 |
aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta |
120 |
Q |
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| T |
32060129 |
aataattatatccattaaatattattaattgatttaatactaattcatagaaataatattttaattccctattcagtaccatttctccttttcctgttta |
32060228 |
T |
|
| Q |
121 |
nnnnnnnaatctccaatttggacagtcttagga |
153 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
32060229 |
tttttttaatctccaatttggacagtcttagga |
32060261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 32060297 - 32060360
Alignment:
| Q |
227 |
gtaaactccaaaaaatcaattttcactctttctttctacacaaaatattttctttctattttct |
290 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32060297 |
gtaaactccaaaaattcaattttcactctttctttctacacaatatattttctttctattttct |
32060360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 13927022 - 13926890
Alignment:
| Q |
21 |
aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13927022 |
aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattccctattcagtaccatttctccttttcctgttta |
13926923 |
T |
|
| Q |
121 |
nnnnnnnaatctccaatttggacagtcttagga |
153 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
13926922 |
tttttttaatctccaatttggacggtcttagga |
13926890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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