View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0852_low_37 (Length: 251)
Name: NF0852_low_37
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_37 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 26583774 - 26583995
Alignment:
| Q |
30 |
cttttgtcgctgtgcatgtatctagaagccttaatgagccttccaaaaactcatcaacccatttctcttggctttgtttgacaaatgcttcttgtgttag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26583774 |
cttttgtcgctgtgcatgtatctagaagccttaatgagccttccaaaaactcatcaacccatttctcttggctttgtttgacaaatgcttcttgtgttag |
26583873 |
T |
|
| Q |
130 |
aggtagttgaaccaatttttcaatgcatatatgcaaatcttgaaggatgtttagtttgtggctgaggactaaagaggaggaggtggaatcagaattacta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26583874 |
aggtagttgaaccaatttttcaatgcatatatgcaaatcttgaaggatgtttagtttgtggctgaggactaaagaggaggaggtggaatcagaattacta |
26583973 |
T |
|
| Q |
230 |
ttagcacctcctaatctagcta |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26583974 |
ttagcacctcctaatctagcta |
26583995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 538 times since January 2019
Visitors: 6130