View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_low_39 (Length: 250)

Name: NF0852_low_39
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_low_39
NF0852_low_39
[»] chr2 (2 HSPs)
chr2 (23-241)||(8516786-8517003)
chr2 (49-129)||(21691074-21691154)
[»] chr7 (1 HSPs)
chr7 (49-129)||(35937755-35937835)
[»] chr1 (3 HSPs)
chr1 (49-129)||(26626910-26626990)
chr1 (49-129)||(49117130-49117210)
chr1 (59-119)||(15821787-15821847)
[»] chr8 (2 HSPs)
chr8 (49-129)||(17606456-17606536)
chr8 (151-226)||(17606593-17606668)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 8516786 - 8517003
Alignment:
Q  23 gagccttgggaacatctacaagttttaaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8516786 gagccttgggaacatctacaagttttaaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaa 8516885  T
Q  123 acgcttgaccacattgtcctgaagcagttgaaaatgagcgcaaattattaatcattgtggatcaatagtacttaagagttcaagcaataatttgagcatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8516886 acgcttgaccacattgtcctgaagcagttgaaaatgagcgcaaattattaatcattgtggatcaatagtactt-agagttcaagcaataatttgagcatc 8516984  T
Q  223 tttaaattctcattcatct 241  Q
    |||||||||||||||||||    
T  8516985 tttaaattctcattcatct 8517003  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 21691154 - 21691074
Alignment:
Q  49 aaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaaacgcttg 129  Q
    |||| |||| ||||| ||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  21691154 aaaaaaccagaataaaactcttgaacagacaaattaccttgtttgtaattggttatctctaactccaactgaaaacgcttg 21691074  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 35937755 - 35937835
Alignment:
Q  49 aaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaaacgcttg 129  Q
    |||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35937755 aaaaaaccagaataaaactcttgaacagacaagttaccttgtttgtaattggctatctctaactccaactgaaaacgcttg 35937835  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 26626910 - 26626990
Alignment:
Q  49 aaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaaacgcttg 129  Q
    |||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26626910 aaaaaaccagaataaaactcttgaacatacaagttaccttgtttgtaattggctatctctaactccaactgaaaacgcttg 26626990  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 49117210 - 49117130
Alignment:
Q  49 aaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaaacgcttg 129  Q
    |||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49117210 aaaaaaccagaataaaactcttgaacatacaagttaccttgtttgtaattggctatctctaactccaactgaaaacgcttg 49117130  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 15821787 - 15821847
Alignment:
Q  59 aataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactg 119  Q
    ||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  15821787 aataatactcttgaacagacaaattaccttgtttgtaattgactatctctaactccaactg 15821847  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 17606456 - 17606536
Alignment:
Q  49 aaaacaccataataatactctggaacaaacaagttaccttgtttgtaattggctatctctaactccaactgtaaacgcttg 129  Q
    |||| |||| ||||||| ||| ||||| |  | ||||||||||| |||||||||||||||| ||||||||| |||||||||    
T  17606456 aaaaaaccagaataatattcttgaacagatgaattaccttgtttataattggctatctctagctccaactgaaaacgcttg 17606536  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 17606593 - 17606668
Alignment:
Q  151 tgaaaatgagcgcaaattattaatcat-tgtggatcaatagtacttaagagttcaagcaataatttgagcatcttta 226  Q
    |||||| |||||||||||||||||||| || |||| ||| |||| | ||| | |||| |||||||||||||||||||    
T  17606593 tgaaaaagagcgcaaattattaatcatctgaggattaatggtac-tgagaatccaagtaataatttgagcatcttta 17606668  T

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