View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0852_low_4 (Length: 713)
Name: NF0852_low_4
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 37046265 - 37045566
Alignment:
| Q |
1 |
tttaaacaatttaatctagacaattttcttgacatcgttttacttatgttccgtagatgataaatagatatatgatgatcaaagcttatttatcatcaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37046265 |
tttaaacaatttaatctagacaattttcttgacatcgttttacttacgttccgtagatgataaatagatatatgatgatcaaagcttatttatcatcaaa |
37046166 |
T |
|
| Q |
101 |
gtgacttcattattcattaatttggacgtgattaactacgtacatttggttgaaaacctgaaaattatggttaactatgtccaaattggtggttaatgag |
200 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37046165 |
gtgacttcattatgcattaatttggacgtgattaactacgtacatttggttgaaaacctgaaaattatggttaactatgtccaaattggtggttaatgag |
37046066 |
T |
|
| Q |
201 |
tttcatatccattgactatctattgaacttaattaatcaccgtttaatctgcattaaccatttaaaaagttttcgcaaaagttgtctaaatttgattgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37046065 |
tttcatatccattgactatctattgaacgtaattaatcaccgtttaatctgcattaaccatttaaaaagttttcgcaaaagttgtctaaatttgattgca |
37045966 |
T |
|
| Q |
301 |
aaaaaccatttctcttgctaattagtttctcaagtcttgtgctgannnnnnnnnnnnnnnnatcctaatagagtgcatgagcttccacgtgtggatttat |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
37045965 |
aaaaaccatttctcttgctaattagtttctcaagtcttgtgctgattttttgttattttttatcctaatagagtgcatgagcttccacgtgtggatttgt |
37045866 |
T |
|
| Q |
401 |
ttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagcttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37045865 |
ttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagcttg |
37045766 |
T |
|
| Q |
501 |
ttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37045765 |
ttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataat |
37045666 |
T |
|
| Q |
601 |
gtacaagttagagcaccttttagatatttctctcaagttaccaatag---tgatgattcagctgaattcaaacaagaatggttaaaaatgaaggtaagta |
697 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37045665 |
gtacaagttagagcaccttttagatatttctctcaagttaccaatagtgatgatgattcagctgaattcaaacaagaatggttaaaaatgaaggtaagta |
37045566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 377 - 704
Target Start/End: Complemental strand, 37036549 - 37036219
Alignment:
| Q |
377 |
atgagcttccacgtgtggatttatttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttga |
476 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37036549 |
atgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggctcttga |
37036450 |
T |
|
| Q |
477 |
ttatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37036449 |
ttatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgccaagttttgg |
37036350 |
T |
|
| Q |
577 |
gttcctttctgtaagaagtataatgtacaagttagagcaccttttagatatttctctcaagttaccaatagtga---tgattcagctgaattcaaacaag |
673 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37036349 |
gtacctttctgtaagaagtataatatacaagttagagcaccttttagatatttctctcaagttaccaatagtgatgatgattcagctgaattcaaacaag |
37036250 |
T |
|
| Q |
674 |
aatggttaaaaatgaaggtaagtagtataat |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37036249 |
aatggttaaaaatgaaggtaagtagtataat |
37036219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 400 - 631
Target Start/End: Complemental strand, 37011836 - 37011605
Alignment:
| Q |
400 |
tttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagctt |
499 |
Q |
| |
|
||||| |||||||||||||| || || ||||||||||| |||||| |||| || || || || | ||||||||||||||||| |||||||||||||||| |
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|
| T |
37011836 |
tttgtaacaacagcagatccagtgctagaaccaccaataatcacagtgaatacagtgttatcattgttggcacttgattatcctgctaataagctagctt |
37011737 |
T |
|
| Q |
500 |
gttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataa |
599 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||| |||| |||||||| | ||||||||| | ||||||| || || ||||||||||| || |
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|
| T |
37011736 |
gttatgtttctgatgatgggtgttcaactcttaccttctatgctcttgtggaagctgccaaatttgctgaaatttgggtaccattttgtaagaagtacaa |
37011637 |
T |
|
| Q |
600 |
tgtacaagttagagcaccttttagatatttct |
631 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |
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| T |
37011636 |
tgtacaatgtagagcaccatttagatatttct |
37011605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 400 - 623
Target Start/End: Complemental strand, 37027926 - 37027703
Alignment:
| Q |
400 |
tttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagctt |
499 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||| |||||| |||| || || ||||| | |||||||||||||||||||| || |||||||| | |
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|
| T |
37027926 |
tttgtgacaacggcagatccagggctagaaccaccaataatcacagtgaatacagtgttgtcattgttggcacttgattatccagcaaacaagctagcat |
37027827 |
T |
|
| Q |
500 |
gttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataa |
599 |
Q |
| |
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| ||||||||||||||||| ||||| | ||||||| |||| ||| ||||||| ||||||||||||||| ||||||| ||||| |||||||| || || |
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|
| T |
37027826 |
gctatgtttctgatgatggatgttcacctcttaccttttatgcccttgtggaagcctctaaatttgctaagctttgggtacctttttgtaagaaatacaa |
37027727 |
T |
|
| Q |
600 |
tgtacaagttagagcaccttttag |
623 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
37027726 |
tgtgcaagttagagcaccttttag |
37027703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 391 - 629
Target Start/End: Original strand, 17656146 - 17656384
Alignment:
| Q |
391 |
gtggatttatttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaata |
490 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| ||||||||||| | ||||||||||| || ||||| ||||||||||| ||| || | | |
|
|
| T |
17656146 |
gtggatttatttgtgacaacagcagacgatgagttagaaccagcaatcatcacaataaacactgttttatcactattagcacttgattacccatctcaca |
17656245 |
T |
|
| Q |
491 |
agctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaa |
590 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| | | | |||||||| |||| ||||||| |||||||| || |||||| || || ||||| |
|
|
| T |
17656246 |
agctagcttgttacgtttctgatgatggttgttctcctctaatcttctatgctcttcacaaagcttcaaaatttgcaaaacattgggtaccattttgtaa |
17656345 |
T |
|
| Q |
591 |
gaagtataatgtacaagttagagcaccttttagatattt |
629 |
Q |
| |
|
||||| ||||||||| |||| || |||||||||||||| |
|
|
| T |
17656346 |
aaagtacaatgtacaaattagggctccttttagatattt |
17656384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 5008623 - 5008669
Alignment:
| Q |
158 |
ctgaaaattatggttaactatgtccaaattggtggttaatgagtttc |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
5008623 |
ctgaaaattatggataactatgtccaaatttgtggttaatgaatttc |
5008669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 31305947 - 31306001
Alignment:
| Q |
149 |
gttgaaaacctgaaaattatggttaactatgtccaaattggtggttaatgagttt |
203 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
31305947 |
gttgaacacctgaaaattatggttaaccatgcccaaatacgtggttaatgagttt |
31306001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 43111574 - 43111621
Alignment:
| Q |
156 |
acctgaaaattatggttaactatgtccaaattggtggttaatgagttt |
203 |
Q |
| |
|
|||||||||||||||||||| | || |||||| ||||||||||||||| |
|
|
| T |
43111574 |
acctgaaaattatggttaacgacgttcaaatttgtggttaatgagttt |
43111621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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