View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_6 (Length: 600)
Name: NF0852_low_6
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 73 - 505
Target Start/End: Complemental strand, 1518144 - 1517712
Alignment:
| Q |
73 |
cagcacagattcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgttt |
172 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1518144 |
cagcacagactcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttactttgcgaggtcgaataacaagaccatatctttgttt |
1518045 |
T |
|
| Q |
173 |
gaaatatggtatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactca |
272 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1518044 |
gaaatatggaatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactaa |
1517945 |
T |
|
| Q |
273 |
atgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcat |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1517944 |
atgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggaagtgaccactgttcatgccaattgttgtcgaagcat |
1517845 |
T |
|
| Q |
373 |
agctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaatatcaattggaca |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1517844 |
agctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttagaggttaactctacgataaatatcaattggaca |
1517745 |
T |
|
| Q |
473 |
agtcaccaatggtgtttgaggtcttggtgatga |
505 |
Q |
| |
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| T |
1517744 |
agtcaccaatggtgtttgaggtcttggtgatga |
1517712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 85 - 435
Target Start/End: Complemental strand, 1512929 - 1512579
Alignment:
| Q |
85 |
ataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtat |
184 |
Q |
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||||||| |||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||| ||||||||||| |||||||||| ||||||| |
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| T |
1512929 |
ataccttggtgatccttggtcagaaaaacatttgatcaatactggatttttctttgtgaggtcaaataaaaagaccatatccttgtttgaaacatggtat |
1512830 |
T |
|
| Q |
185 |
ggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttct |
284 |
Q |
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|||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||| || ||||||| |||||||||| || ||||| ||||| |||| |
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| T |
1512829 |
ggaaagaaagacaattccacaggtaaaaaggagcaagatgtgcttattgacctcattgaagctggtatatttggacatttagggctcaaggttagattct |
1512730 |
T |
|
| Q |
285 |
tggatactctctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggt |
384 |
Q |
| |
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||||||| || ||||||||||||||||| ||||| |||||||| |||||||||| || | |||||||||| |||||||||||||| |||| ||||| |
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| T |
1512729 |
tggataccctttattttagtggattttgccaagacagtaaagatgttagggcagtaacgatcattcatgccaactgttgtcgaagcatcactgcgaaggt |
1512630 |
T |
|
| Q |
385 |
ggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttaga |
435 |
Q |
| |
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||| ||||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
1512629 |
ggccgatttgaaggcaacccttcgtgattggaagcaatttaggaggttaga |
1512579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 94 - 434
Target Start/End: Complemental strand, 1522486 - 1522146
Alignment:
| Q |
94 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
193 |
Q |
| |
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||||||||||||||||||| ||| | | ||||||||||||| ||| | ||| || || ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1522486 |
tgatccttggtcagaaaaaaatcgagtcaatactggatttttctttgtgagatcaaacaacaagaccatatctttgtttgagacatggtatggaatgaaa |
1522387 |
T |
|
| Q |
194 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
293 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||| || || |||||||| |||| | |||||||||||||| | |
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| T |
1522386 |
gataatttcacagaaaaaaaggagcaagatgtgcttgaggacctcattaaaggtggtatatttcgagatttgggaatcaaggcaaggttcttggataccc |
1522287 |
T |
|
| Q |
294 |
tctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcatagctgcaaaggtggctgattt |
393 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||| | ||||| |||| |||||||||||||| |
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| T |
1522286 |
tctattttagtggattttgccaagatagtaaagattttagggctgtaaccactgtccatgccaattgttgtaggagcatcactgccaaggtggctgattt |
1522187 |
T |
|
| Q |
394 |
aaaggcagtccttcatgattggaagcaatttaggaggttag |
434 |
Q |
| |
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|||| | ||||| ||||||||| |||||||||||||| |
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| T |
1522186 |
aaagaaaacccttcgtgattggaaaagatttaggaggttag |
1522146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 73 - 499
Target Start/End: Complemental strand, 16643815 - 16643395
Alignment:
| Q |
73 |
cagcacagattcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgttt |
172 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||| | ||||| |||||||||||||||||||||||| |
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|
| T |
16643815 |
cagcacagatttatatcttgatgatccttggtcagaaaaacacagaatcaataccggattttactttgtaaggtccaataacaagaccatatctttgttt |
16643716 |
T |
|
| Q |
173 |
gaaatatggtatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactca |
272 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||| |
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|
| T |
16643715 |
gaaacatggtatggaaagaaagacaattccacaggaaaaaaagagcaagatgttcttcttgacctcattagacatggtataattggacacttgggactca |
16643616 |
T |
|
| Q |
273 |
atgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggcagtgaccactgttcatgccaattgttgtcgaagcat |
372 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16643615 |
aggttaggttcttggatactctctattttagtggtttttgtcaagatagtaaagattttagggcagtgaccactgttcatgccaattgttgtcgaagtat |
16643516 |
T |
|
| Q |
373 |
agctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaatatcaattggaca |
472 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||| ||| || |||| ||||||||| |
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| T |
16643515 |
cactgcaaaggtggctgatttaaaggcagccctacatgattggaaaaaatttaggaggttag------aggttaactatacaatggatatgaattggaca |
16643422 |
T |
|
| Q |
473 |
agtcaccaatggtgtttgaggtcttgg |
499 |
Q |
| |
|
||||| || |||||| ||| ||||||| |
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|
| T |
16643421 |
agtcatcagtggtgtgtgaagtcttgg |
16643395 |
T |
|
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