View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_low_7 (Length: 552)
Name: NF0852_low_7
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 40190376 - 40190737
Alignment:
| Q |
30 |
atccatgtacagaggagtaacaaggtctcacaggctatatcaattacttagtattaaccattaaaattcaattaataatatttattatttttctaaagta |
129 |
Q |
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| T |
40190376 |
atccatgtacagaggagtaacaaggtctcacaggctatatcaattacttagtattaaccattaaaattcaattaataatatttattatttttctaaagta |
40190475 |
T |
|
| Q |
130 |
nnnnnnnnnn-caaactcttgttcacttggtagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatat |
228 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190476 |
tttttttttttcaaactcttgttcacttgctagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatat |
40190575 |
T |
|
| Q |
229 |
cttggaactttcagtgagttctttcatactctttgtttaactatttttccattgatcatgtgccaatttaatattgtaatgtcctagacacatgtggata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190576 |
cttggaactttcagtgagttctttcatactctttgtttaactatttttccattgatcatgtgccaatttaatattgtaatgtcctagacacatgtggata |
40190675 |
T |
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| Q |
329 |
tgtttaatcacttacattttcttaaactattacatcgtgtcagtgtcatgtccaacgttcat |
390 |
Q |
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| T |
40190676 |
tgtttaatcacttacattttcttaaactattacatcgtgtcagtgtcatgtctaacgttcat |
40190737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 24562186 - 24562109
Alignment:
| Q |
166 |
catcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagt |
243 |
Q |
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| T |
24562186 |
catcaccaacatggaagatggcaagcaaggattggcagagttgcaggaaataaagatctatacttgggaactttcagt |
24562109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 5177705 - 5177616
Alignment:
| Q |
158 |
gtagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagtgagt |
247 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
5177705 |
gtagcagacatcatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagt |
5177616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 30618771 - 30618689
Alignment:
| Q |
161 |
gcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagt |
243 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||| ||||| || || || |||||||| || || |||||||||||| |
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|
| T |
30618771 |
gcagacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaaagatctctacctaggaactttcagt |
30618689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 47753932 - 47754014
Alignment:
| Q |
161 |
gcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagt |
243 |
Q |
| |
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||||||||||||||||||| || ||||||||||| ||||| ||||| |||||||| || || || || |||||||| |||||| |
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| T |
47753932 |
gcagacatcaccaacatggtaggtggcaagctaggattggaagagttgctggtaacaaggacctttaccttggaacattcagt |
47754014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 41964287 - 41964229
Alignment:
| Q |
166 |
catcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatct |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| || || || |||||||| |
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| T |
41964287 |
catcaccaacatggaagatggcaagcaagaattggtcgagtcgcgggaaacaaagatct |
41964229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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