View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_13 (Length: 385)
Name: NF0854_high_13
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 46379434 - 46379779
Alignment:
| Q |
1 |
aatatatagctcagtttatttgcttatgaattaatcctttattcttgtagagaagataagataaattgtctccatttgtccctttttatggataaatttg |
100 |
Q |
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| T |
46379434 |
aatatatagctcagtttatttgcttatgaattaatcctttattcttgtagagaagataagataaattgtctccatttgtccctttttatggataaatttg |
46379533 |
T |
|
| Q |
101 |
atttgtcattgtgaaatatgaactggaaatgggaattcaaaatttagaataccattatggaatgctgttagaaactgtgttggagatcatttttctgcat |
200 |
Q |
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| T |
46379534 |
atttgtcattgtgaaatatgaactggaaatgggaattcaaaatttagaataccattatggaatgctgttagaaactgtgttggagatcatttttctgcat |
46379633 |
T |
|
| Q |
201 |
tattctctgtcgtaattaataaatattgcatgcatctgcattggaattcaaattatagcaccaaatataaaaagctttagtttcgacttttaatgcagaa |
300 |
Q |
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| T |
46379634 |
tattctctgtcgtaattaataaatat----------tgcattggaattcaaattatagcaccaaatataaaaagctttagtttcgacttttaatgcagaa |
46379723 |
T |
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| Q |
301 |
aaagtagtggtgtttgagttggaatttgaaaatgtcgatgtcaagcaagtcaagtt |
356 |
Q |
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| T |
46379724 |
aaagtagtggtgtttgagttggaatttgaaaatgtcgatgtcaagcgagttaagtt |
46379779 |
T |
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