View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_16 (Length: 358)
Name: NF0854_high_16
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 15438241 - 15438552
Alignment:
| Q |
33 |
gatctattcattgtgtcatgaatcaattgtttcaaatgcttaagttgttaagtcaaagacataatggttttatatctaacatactgcttcatatttgaat |
132 |
Q |
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| T |
15438241 |
gatctattcattgtgtcatgaatcaattgtttcaaatgcttaagttgttaagtcaaagacataatggttttatatctaacatactgtttcgtatttgaat |
15438340 |
T |
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| Q |
133 |
gcttatttgcagataggagattttcaaaacaattatagaagtggttgggatgttatgccgttcaatgatgatatgccattcaatgatttcagtctggaac |
232 |
Q |
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| T |
15438341 |
gcttatttgcagataggagattttcaaaacaattatagaagtggttgggatgttatgccgttcaatcatgatatgccattcaatgatttcagtctggaat |
15438440 |
T |
|
| Q |
233 |
cattgaacttgaacttcgattaccaaattcctcacgatatgggttttgctgatgataggccctcatcacatcacatatcagcacactatgctgataacag |
332 |
Q |
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| T |
15438441 |
cattgaacttgaactttgattaccaaattcctcacgatatgggttttgctgatgataggccctcatcacatcacacatcagcacactatgctgataacag |
15438540 |
T |
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| Q |
333 |
acacttgcaaca |
344 |
Q |
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| T |
15438541 |
acacttgcaaca |
15438552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 11791563 - 11791395
Alignment:
| Q |
34 |
atctattcattgtgtcatgaatcaattgtttcaaatgcttaagttgttaagtcaaagacataat-ggttttatatctaacatactgcttcatatttgaat |
132 |
Q |
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| T |
11791563 |
atctatgcactgtgttataaatcacttgtttcaaacgtttaagttgttaggtgaaagacatgattggttttttatctaactcattgcttcatgtttgaat |
11791464 |
T |
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| Q |
133 |
gcttatttgcagataggagattttcaaaacaattatagaagtggttgggatgttatgccgttcaatgat |
201 |
Q |
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| T |
11791463 |
gcttatttgcagaatggaaattttcaaaacaattatagaggtggttggaataatatgccattcaatgat |
11791395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 15438571 - 15438623
Alignment:
| Q |
279 |
tgctgatgataggccctcatcacatcacatatcagcacactatgctgataaca |
331 |
Q |
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| T |
15438571 |
tgctgatgataggccctcatcacatcagacatcagcagactattctgataaca |
15438623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 11783736 - 11783578
Alignment:
| Q |
46 |
tgtcatgaatcaattgtttcaaatgcttaagttgttaagtcaaagacataat-ggttttatatctaacat--actgcttcatatttgaatgcttatttgc |
142 |
Q |
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||||||||| |||||||||| ||||| |||||||||| | |||| || || ||| |||||| ||||| |||||||||| ||| |||| ||||||| |
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| T |
11783736 |
tgtcatgaaccaattgtttcgaatgcataagttgttagttaaaagttatgattggtattatatttaacactgactgcttcatgtttcaatgtgtatttgc |
11783637 |
T |
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| Q |
143 |
agataggagattttcaaaacaattatagaagtggttgggatgttatgccgttcaatgat |
201 |
Q |
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||| || ||||||||||| |||||||| |||||||| ||| |||||| ||| ||||| |
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| T |
11783636 |
agaatagaaattttcaaaactattatagaggtggttggaatgatatgccattcgatgat |
11783578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 503710 - 503578
Alignment:
| Q |
46 |
tgtcatgaatcaattgtttcaaatgcttaagttgttaagtcaaagacataat-ggttttatatctaacatactgcttcatatttgaatgcttatttgcag |
144 |
Q |
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|||||||||||||| ||| ||| ||||||||| ||| || |||||||| || |||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
503710 |
tgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgcttcatgtttgaatgcttatttgcag |
503611 |
T |
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| Q |
145 |
ataggagattttcaaaacaattatagaagtggt |
177 |
Q |
| |
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| ||| ||||||||||||||| |||| ||||| |
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| T |
503610 |
aatggaaattttcaaaacaattgtagaggtggt |
503578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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