View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_22 (Length: 313)
Name: NF0854_high_22
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 46 - 285
Target Start/End: Complemental strand, 19077105 - 19076866
Alignment:
| Q |
46 |
atcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacatcttgcttgttatgtgcagttacaaaattctaatt |
145 |
Q |
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| T |
19077105 |
atcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacctcttgcttgttatgtgcagttacaaaattctgatt |
19077006 |
T |
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| Q |
146 |
agaagatattttcaaactcgcataagcctgtctatgaaatggttcaattaacggtacaaagagattatgaaatgaagagatttgcaagaaattatgtgag |
245 |
Q |
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| T |
19077005 |
agaagatattttcaaactcgcataagcctatctatgaaatggttcaattaatggtacaaagagattctgaaatgaagagatttgcaagaaattatgtgag |
19076906 |
T |
|
| Q |
246 |
tccaacctgcaaggtacaattttactaccatgtagtatat |
285 |
Q |
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| T |
19076905 |
tccaacctgcaaggtacaattttactaccatgtagtatat |
19076866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 46 - 264
Target Start/End: Original strand, 46920999 - 46921214
Alignment:
| Q |
46 |
atcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacatcttgcttgttatgtgcagttacaaaattctaatt |
145 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| | | |
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| T |
46920999 |
atcaagaaaggaaaatgaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacctcttgcttgctatgtgtagttacaaaattcagaat |
46921098 |
T |
|
| Q |
146 |
agaagatattttcaaactcgcataagcctgtctatgaaatggttcaattaacggtacaaagagattatgaaatgaagagatttgcaagaaattatgtgag |
245 |
Q |
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|||||| |||||||||||| ||||||||| ||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46921099 |
agaagacattttcaaactctcataagcctatctatcaaacggttcatttaatggtacaaagagattatgaaatgaagagatttgcaagaa---atgtgag |
46921195 |
T |
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| Q |
246 |
tccaacctgcaaggtacaa |
264 |
Q |
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|||| ||| |||||||||| |
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| T |
46921196 |
tccagccttcaaggtacaa |
46921214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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