View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_33 (Length: 251)
Name: NF0854_high_33
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3048720 - 3048474
Alignment:
| Q |
1 |
cacaacaagcaatgttacggatgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaatataattata |
100 |
Q |
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| T |
3048720 |
cacaacaaggaatgttacggatgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaataaaattata |
3048621 |
T |
|
| Q |
101 |
tactataattcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataannnnnnnnacaagacat |
200 |
Q |
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| T |
3048620 |
cactataattcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataattttttttacaagacat |
3048521 |
T |
|
| Q |
201 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
247 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3048520 |
aaagtgtagaataataaacatgctactcaacaagagaataatctacc |
3048474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 33465633 - 33465679
Alignment:
| Q |
201 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
247 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| |||||||||| |
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|
| T |
33465633 |
aaagtgtagaataataagcatgctactcaaaaagagtataatctacc |
33465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 38866317 - 38866376
Alignment:
| Q |
109 |
ttcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
168 |
Q |
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|||||||| |||| |||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
38866317 |
ttcaatcttgtcagtttattcgcaaacaaaaggaaagacacaaagaacaaggtccaaaca |
38866376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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