View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_34 (Length: 251)
Name: NF0854_high_34
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_34 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 1407283 - 1407517
Alignment:
| Q |
17 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
116 |
Q |
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| T |
1407283 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagattagaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
1407382 |
T |
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| Q |
117 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaaga |
216 |
Q |
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| T |
1407383 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggcgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaaga |
1407482 |
T |
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| Q |
217 |
taccaaacaactttcctacataaaacacataggtc |
251 |
Q |
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| T |
1407483 |
taccaaacaactttcctacataaaacacataggtc |
1407517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 1364121 - 1363907
Alignment:
| Q |
35 |
atcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
134 |
Q |
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| T |
1364121 |
atcaaacatcataattgtaaatagtaaga--ttagaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
1364024 |
T |
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| Q |
135 |
aacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttccta |
234 |
Q |
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| T |
1364023 |
aaggagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaagataccaaacaactttccta |
1363924 |
T |
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| Q |
235 |
cataaaacacataggtc |
251 |
Q |
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| T |
1363923 |
cataaaacacataggtc |
1363907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 1369656 - 1369455
Alignment:
| Q |
56 |
tagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcag------cgagcaacgagtctaacata |
149 |
Q |
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||||||| |||| ||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||| ||||||| ||||||| ||| |
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| T |
1369656 |
tagtaagggattagaaaatacatgtaataaatgttcaattttttctctatccaactcctttctgttttcttcaggaatgtcgagcaaggagtctagcatg |
1369557 |
T |
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| Q |
150 |
tcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttcctacataaaacacatagg |
249 |
Q |
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||||||||||||| |||||||||| |||||||||| |||||| |||| |||||||| ||||| |||| | ||||||||||| | |||||||| ||||| |
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| T |
1369556 |
tcgttgttggtgaaaaaaccatcctcttctcgcaacttcaacctttggtcgattatgttgtcgaagacattgaacaactttccaatataaaacatatagg |
1369457 |
T |
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| Q |
250 |
tc |
251 |
Q |
| |
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|| |
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| T |
1369456 |
tc |
1369455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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