View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_42 (Length: 228)
Name: NF0854_high_42
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 31366655 - 31366441
Alignment:
| Q |
7 |
acaatacatttttgttaaccaaagaagtggcatctgagagaagggatgaagaggttgatgaagacacagaagaacacttgtgattgttgttagt---nnn |
103 |
Q |
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| T |
31366655 |
acaatacatttttgttaaccaaagaagtggcatctgagagaagggatgaggaggttgatgaagacacagaagaacacttgtgattgttgttagtatcatc |
31366556 |
T |
|
| Q |
104 |
nnnnnnnnnnnnnntgttgttgtt---aaagaagtcgtcaaaataggtagtccagccactctcctcagtagaatcagtaggagctttgcttatggaactc |
200 |
Q |
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||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31366555 |
atcatcatcatcattgttgctgttgttaaagaagtagtcaaaataggtagtccagccactctcctcagtagaatcagtaggagctttgcttatggaactc |
31366456 |
T |
|
| Q |
201 |
attaggtttttgagg |
215 |
Q |
| |
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||||||||||||||| |
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|
| T |
31366455 |
attaggtttttgagg |
31366441 |
T |
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