View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0854_high_6 (Length: 521)

Name: NF0854_high_6
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0854_high_6
NF0854_high_6
[»] chr7 (4 HSPs)
chr7 (164-521)||(37096886-37097228)
chr7 (164-521)||(37090519-37090861)
chr7 (13-81)||(37097314-37097382)
chr7 (22-92)||(37090927-37090997)
[»] chr1 (1 HSPs)
chr1 (169-307)||(23187296-23187434)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 164 - 521
Target Start/End: Complemental strand, 37097228 - 37096886
Alignment:
Q  164 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggttattcactttgtgagcatcatttagg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37097228 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggttattcactttgtgagcatcatttagg 37097129  T
Q  264 gaaaggaaggttgagaagtatgacaagtgttagaaataggtctaatattggattttnnnnnnnnnnnnnnnnnnnngcaccaaacattattgttgatagt 363  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||                    | |||||||| |  ||||||||||    
T  37097128 gaaaggaagattgagaagtatgacaagtgttagaaatagatctaatattggatttt------ctactactactactgaaccaaacaatgctgttgatagt 37097035  T
Q  364 gcttcatcttctaattctgctcttgaaatgcttgaaaagaaaatcatcaatgggtatgacgataagttggataatgatgatgagaagaagccagtggtaa 463  Q
    ||||||||||||||||||| |         |||||||||||||||||  ||| | |||||||||  |||| |||||||||||||||||||||||||||||    
T  37097034 gcttcatcttctaattctgat---------cttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaa 37096944  T
Q  464 ttgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttatt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37096943 ttgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttatt 37096886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 164 - 521
Target Start/End: Complemental strand, 37090861 - 37090519
Alignment:
Q  164 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggttattcactttgtgagcatcatttagg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37090861 cagtgatggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggttattcactttgtgagcatcatttagg 37090762  T
Q  264 gaaaggaaggttgagaagtatgacaagtgttagaaataggtctaatattggattttnnnnnnnnnnnnnnnnnnnngcaccaaacattattgttgatagt 363  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||                    | |||||||| |  ||||||||||    
T  37090761 gaaaggaagattgagaagtatgacaagtgttagaaatagatctaatattggatttt------ctactactactactgaaccaaacaatgctgttgatagt 37090668  T
Q  364 gcttcatcttctaattctgctcttgaaatgcttgaaaagaaaatcatcaatgggtatgacgataagttggataatgatgatgagaagaagccagtggtaa 463  Q
    ||||||||||||||||||| |         |||||||||||||||||  ||| | |||||||||  |||| |||||||||||||||||||||||||||||    
T  37090667 gcttcatcttctaattctgat---------cttgaaaagaaaatcattgatgagaatgacgataccttgggtaatgatgatgagaagaagccagtggtaa 37090577  T
Q  464 ttgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttatt 521  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  37090576 ttgcaaagaagagaatgaagcttggaatggttaaagcccgttctatgatcagcttatt 37090519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 37097382 - 37097314
Alignment:
Q  13 aatattgcgatggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgtataagaag 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37097382 aatattgcgatggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgaataagaag 37097314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 37090997 - 37090927
Alignment:
Q  22 atggagggtaatgatagtaagaaagtgaaggctaagacgaacaccaagatgtataagaagggttctttggg 92  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  37090997 atggagggtaatgatagtaagaaagtgaaggctaagatgaacaccaagatgaataagaagtgttctttggg 37090927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 23187434 - 23187296
Alignment:
Q  169 atggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggttattcactttgtgagcatcatttagggaaag 268  Q
    |||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  23187434 atggaaggttcgcggtgcagtcgagttaatggaagaggatggaggtgttgtcaacaaaccctagttggttattctctttgtgagcatcatttagggaaag 23187335  T
Q  269 gaaggttgagaagtatgacaagtgttagaaataggtcta 307  Q
    |||| |||||||| ||||||||||| |||||||||||||    
T  23187334 gaagattgagaagcatgacaagtgtaagaaataggtcta 23187296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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