View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0854_high_8 (Length: 514)
Name: NF0854_high_8
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_8 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 143107 - 143609
Alignment:
| Q |
1 |
ttgccttgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagtatttggaagaataggaacccgaaaatttggaatgatgt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
143107 |
ttgccgtgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagtatttggaaaaataggaacccgaaaatttggaatgatgt |
143206 |
T |
|
| Q |
101 |
caactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgctcaagaagctaagtataactttaaccatataaatacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
143207 |
caactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgctcaagaagctaagtgtaactttaaccatataaatacaat |
143306 |
T |
|
| Q |
201 |
gttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagatgttcgggggagttttattctagccaaaactaagtggat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
143307 |
gttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagatgttcgggggagttttgttctagccaaaactaagtggat |
143406 |
T |
|
| Q |
301 |
ttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgggtgagagatttacatttgtcggaaatgaactttgagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143407 |
ttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgggtgagagatttacatttgtcggaaatgaactttgagtt |
143506 |
T |
|
| Q |
401 |
ggactcaaagacttttgtggataatctttacgagtgtctcatattttgttgtcattattggtgattgcggacgcattctatatacagatcttgtgaagtc |
500 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143507 |
ggactcaaagactgttgtggataatctttacgagtgtctcatattttgtggtcattattggtgattgcggacgcattctatatacagatcttgtgaagtc |
143606 |
T |
|
| Q |
501 |
tct |
503 |
Q |
| |
|
||| |
|
|
| T |
143607 |
tct |
143609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 138 times since January 2019
Visitors: 6125