View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_high_9 (Length: 505)
Name: NF0854_high_9
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 491
Target Start/End: Complemental strand, 9764456 - 9763975
Alignment:
| Q |
9 |
attctgatgttctcatgcttgaggcatcataagatgttatctaacctggaacacaacttctcaccaccactcaaacaaccttgacctctgttgatgacac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9764456 |
attctgatgttctcatgcttgaggcatcataagatgttatttaacctggaacacaacttctcaccaccactcaaacaaccttgacctctgttgatgacac |
9764357 |
T |
|
| Q |
109 |
tcaagctatggatatattatcatctaatattctataagttgccatcatagaaatatcaactcaaactttcattaacccacctcttatccttatatctaac |
208 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9764356 |
tcaagctatggatatattatcatataatattctataagttgtcatcaaagaaataccaactcaaactttcattaacccacctcttatccttatatctaac |
9764257 |
T |
|
| Q |
209 |
cttgttctgcaagaagtgtgtcaagagatacttgatagtcttctagaactagttgaagctagacatcaagctatacatcttctcaactatattgataaat |
308 |
Q |
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|||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
9764256 |
cttgttctccaaggagtgtgtcaagagatatttgatagtcttctagaactagttgaagctagacatcaagccatacatcttctcaactatattgatacat |
9764157 |
T |
|
| Q |
309 |
ggaatagtctgagaaagcttgttgacaatacattggacaatcttcaaaccattgcaattgcttctcagcaagaagcactcaagaaaaggttttcatagtc |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
9764156 |
ggaatagtctgagaaagcttgtggacaatacattggacaatcttcaaaccattgcaatggcttctcagcaagaagtactcaagaaaaggttttcaaagtc |
9764057 |
T |
|
| Q |
409 |
tgcaagagcatggaaannnnnnnaagtaaagaccaatataccaagacagatcatatactctgagctagtaaaagagtctgata |
491 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
9764056 |
tacaagagcatggaaa-ttttttaagtaaagaccaatataccaagacaaattatatactctgagctagtaaaagagtctgata |
9763975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 24493503 - 24493876
Alignment:
| Q |
11 |
tctgatgttctcatgcttgaggcatcataagatgttatctaacctggaacacaacttctcaccaccactcaaacaaccttgacctctgttgatgacactc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| |||||| ||| |||| ||| ||| ||||||||| | |||||||| ||||||| |||| |
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| T |
24493503 |
tctgatgttctcatgcttgaggcgtcagaagatgttatccaacctgaaactcaacctcttacctccactcaaattgtcctgacctctattgatgaaactc |
24493602 |
T |
|
| Q |
111 |
aagctatggatatattatcatctaatattctataagttgccatcatagaaatatcaactcaaactttcattaacccacctcttatccttatatctaacct |
210 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||||| |||||||||||| | ||||||||||||||||||| |||| ||| |||| |||||| | |
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| T |
24493603 |
aagctatggatatatcagaatcagatattccataagccatcatcatagaaatcccctctcaaactttcattaacccgcctcctatgcttacctctaactt |
24493702 |
T |
|
| Q |
211 |
tgttctgcaagaagtgtgtcaagagatacttgatagtcttctagaactagttgaagctagacatcaagctatacatcttctcaactatattgataaatgg |
310 |
Q |
| |
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||| | |||| |||||||||||| ||| |||||||||| | || ||||||||||| ||||||||||| ||||||||| |||||||| || |||||| |
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| T |
24493703 |
agttttacaaggagtgtgtcaagaaatatttgatagtctgttggagctagttgaagcaagacatcaagcaatacatcttgtcaactatgccgacaaatgg |
24493802 |
T |
|
| Q |
311 |
aatagtctgagaaagcttgttgacaatacattggacaatcttcaaaccattgcaattgcttctcagcaagaagc |
384 |
Q |
| |
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|| || ||| ||||||| | || | || |||||||||||| | ||||| | ||||||||| ||||||||||| |
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|
| T |
24493803 |
aacagattgaaaaagcttatgcactacacgttggacaatctttataccatggaaattgcttcacagcaagaagc |
24493876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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