View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_10 (Length: 519)
Name: NF0854_low_10
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 48 - 519
Target Start/End: Complemental strand, 48215029 - 48214568
Alignment:
| Q |
48 |
tcataggtgaattgagagaaaatcttaacaaactaacagagagataaaaatcttaatcaaatctcatatattgagtgatgaaaatgagaaatgtacaata |
147 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48215029 |
tcattggtgaattgagagaaaatcttaacaaaataacagaga--taaaaatcttaatcaaatctcatatattgagtgatgaaaatgagaaatgtacaata |
48214932 |
T |
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| Q |
148 |
tcaactatttattgttctagagtcttctaacaaacttttacgatctctaactaactccaaaggctaactttgactcaacatacccagtatagagtgatga |
247 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
48214931 |
tcaactatttatcgttctagagtcttttaacaaacttttacaatctctaactaactccaaaggctaacgttgactcaacatatccaatatagagtgatga |
48214832 |
T |
|
| Q |
248 |
aatatatgctacactatagtgcacctatataatgtagtcttgcatcctataagtttcactccttgatggtttcttctgcatgcaacctgcttatggttac |
347 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48214831 |
aatatat--------atagtgcacctatataatgtagtcttgcatcctataagtttcactccttgatggtttcttctgcatgcaacctgcttatggttac |
48214740 |
T |
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| Q |
348 |
atcttgtatcaataaacataacttgagtttaagaatgatttaatataaaaaagtatttaactataatggttagctaattgcttaaaatcatttctttgtt |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48214739 |
atcttgtatcaataaacataacttgagtttaagaatgatttaatataaaaaagtatttaactataatggttagctaattgcttaaaatcatttctttgtt |
48214640 |
T |
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| Q |
448 |
tnnnnnnnngaaggtaattgcttaaaatcgttgtggtatgagcctatatattaggaataaccagttcaattc |
519 |
Q |
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| T |
48214639 |
taaaaaaaagaaggtaattgcttaaaatcgttgtggtatgagcatatatattaggaataaccagttcaattc |
48214568 |
T |
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