View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0854_low_13 (Length: 484)
Name: NF0854_low_13
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 41370194 - 41369921
Alignment:
| Q |
29 |
gtgttcttgattaccccttgttacttgcaatacatatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
41370194 |
gtgttcttgattaccccttgttacttgcaatacatatcaaatacgacgaataataggaatcaagcataaatcatattttcttactgctgtaatcccaaat |
41370095 |
T |
|
| Q |
129 |
gattcagtcatatccaactcttcattcttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggc |
228 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41370094 |
gattcagtcatatccaattcttcattcttcatttcattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaagc |
41369995 |
T |
|
| Q |
229 |
caaacataatgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatca |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
41369994 |
caaacataatgcctggacacatcctcctccctgcatcaaatggtatgtattcaaagtctatacctttgaaatca |
41369921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 79 - 453
Target Start/End: Complemental strand, 41287472 - 41287098
Alignment:
| Q |
79 |
taataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattcttcatttcattggaaagcttcca |
178 |
Q |
| |
|
|||||||||| || |||| ||| ||||||| || | |||||||| ||||| ||||||||||| | |||||| ||||||| ||||| ||||||||| |
|
|
| T |
41287472 |
taataggaattaatcataggtcatgttttcttcctacagtaatcccaaatgactcagtcatatcaagttcttcacacttcattccattgagaagcttcca |
41287373 |
T |
|
| Q |
179 |
atcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctgcaccaaatggtatgtat |
278 |
Q |
| |
|
||||||||| |||||||| ||||||||| | ||||||||| |||| ||| || ||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
41287372 |
atcaaagtgataaagtaattcagcaagaggaagctcaacgttgggtatgccgaaggcaatgcctgggcacatcctccttccagcaccaaatggtatgtat |
41287273 |
T |
|
| Q |
279 |
tcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttccaattgcca |
378 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287272 |
tcgaagtctgtgccattgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttccaattgccc |
41287173 |
T |
|
| Q |
379 |
aagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287172 |
aagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
41287098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 56 - 453
Target Start/End: Complemental strand, 41317329 - 41316932
Alignment:
| Q |
56 |
caatacatatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattc |
155 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||| ||||||| | | | |||||| |||| |||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
41317329 |
caatacatattaaaaacgacgagggataggaattaagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatccaattcttcattc |
41317230 |
T |
|
| Q |
156 |
ttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcc |
255 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||| |||||||||||| |||||| || || | | |||| ||| |||||||||||||||| |
|
|
| T |
41317229 |
ttcattccattgggaagcttccaatcaaagtgataaagtaacttagcaagaggcagctcaacattgggcaaggcaaatgcaatacctggacacatcctcc |
41317130 |
T |
|
| Q |
256 |
tccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaata |
355 |
Q |
| |
|
| || ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||| |
|
|
| T |
41317129 |
ttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaata |
41317030 |
T |
|
| Q |
356 |
tcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||| |||||||| || || ||||| ||||| ||||||||| || | |||||||||||| |
|
|
| T |
41317029 |
ccttggatctcttccaatagcccaagcattgacagcaacccttgtcttggctggaatctcataaccattgatttggcatctctccctactttctcttg |
41316932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 56 - 453
Target Start/End: Complemental strand, 41325393 - 41324996
Alignment:
| Q |
56 |
caatacatatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattc |
155 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||| ||||||| | | ||||| |||| |||||||| ||||| || |||||||| | ||||||||| |
|
|
| T |
41325393 |
caatacatattaaagacgacgagtaataggaattaagcatagattgtgctttctacctgcagtaatcccaaatgactcggtcatatctagttcttcattc |
41325294 |
T |
|
| Q |
156 |
ttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcc |
255 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||| ||| || ||||||||||| | |
|
|
| T |
41325293 |
ttcattttattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaattcaacgttgggtaaggcaaatgcaattccgggacacatccttc |
41325194 |
T |
|
| Q |
256 |
tccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaata |
355 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| || |||||||| |
|
|
| T |
41325193 |
ttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactttcagcatcaacccaata |
41325094 |
T |
|
| Q |
356 |
tcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| ||||| ||||||||| || | |||||||||||| |
|
|
| T |
41325093 |
ccttggatctcttccaatagcccaagcattaaccatgacccttgtcttagctgggatttcatacccattgatttggcatctctccctactttctcttg |
41324996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 57 - 453
Target Start/End: Complemental strand, 41333302 - 41332906
Alignment:
| Q |
57 |
aatacatatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattct |
156 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| || |||| | | | |||||| || | |||||||| ||||| || |||||||| | |||||||||| |
|
|
| T |
41333302 |
aatacatattaaagacgacgagtaataggaattaaacatagatcgtgctttcttcctacagtaatcccaaatgactcggtcatatctagttcttcattct |
41333203 |
T |
|
| Q |
157 |
tcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcct |
256 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||||||| ||||||||| | ||||| ||| |||||| |||| ||| || |||||||||||||| |
|
|
| T |
41333202 |
tcattttattgggaagcttccaatcaaagtggcaaagtaattgagcaagaggtagctcaatgtttggtagggcaaatgcaattccgggacacatcctcct |
41333103 |
T |
|
| Q |
257 |
ccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatat |
356 |
Q |
| |
|
|| ||||||||||||||| |||| ||||| ||||||||||| ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||| |
|
|
| T |
41333102 |
tccagcaccaaatggtatgaattcgaagtccgtgcctttgaattcaattgtgctattaacaaacctctcaggtttaaaactctcagcttcaacccaatac |
41333003 |
T |
|
| Q |
357 |
cttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
|||| |||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41333002 |
cttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattaatttggcatggcttcatactttctcttg |
41332906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 62 - 453
Target Start/End: Complemental strand, 41367476 - 41367085
Alignment:
| Q |
62 |
atatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattcttcatt |
161 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||| ||||||| || ||| || ||| ||||| || |||||||| || ||||||||||||||| |
|
|
| T |
41367476 |
atatcaaggacgacgaatgaaaggaatcaagcataagtcatgttttcttcctactgcaagcccaaatgactccgtcatatctaattcttcattcttcatt |
41367377 |
T |
|
| Q |
162 |
tcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctg |
261 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||| ||| | ||| | ||| | ||| |||| | |||| ||| || ||||||||||||| || | |
|
|
| T |
41367376 |
ccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgttgggtaaggcaaatgcaatacccagacacatcctccttccag |
41367277 |
T |
|
| Q |
262 |
caccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttgg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||| || || ||| ||| || || |||||||| || || |
|
|
| T |
41367276 |
caccaaatggtatgtattcaaagtctgtgcctttgaaatcaattcggctattaagaaatctctcaggcttaaaactcttggcatcaacccaatacctcgg |
41367177 |
T |
|
| Q |
362 |
atctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| ||||| ||||| || ||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
41367176 |
atctcttccaatagcccaagcattaacaatgacccttgtcttagctgggatatcatatctatttatttggcatggcttcgtactttctcttg |
41367085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 157 - 453
Target Start/End: Complemental strand, 41329269 - 41328973
Alignment:
| Q |
157 |
tcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcct |
256 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||||| |||||||||||| |||||| || |||| | |||| ||| |||||||||||||| || |
|
|
| T |
41329269 |
tcattccattgggaagcttccaatcaaagtgataaagtaacttagcaagaggcagctcaacattgggtatggcaaatgaaatacctggacacatccttct |
41329170 |
T |
|
| Q |
257 |
ccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatat |
356 |
Q |
| |
|
|| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||| |
|
|
| T |
41329169 |
tccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactctcagcttcaacccaatac |
41329070 |
T |
|
| Q |
357 |
cttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatactttctcttg |
453 |
Q |
| |
|
|||| |||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| ||||| ||||||||| || | |||||||||||| |
|
|
| T |
41329069 |
cttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattgatttggcatctctccctactttctcttg |
41328973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 165 - 433
Target Start/End: Complemental strand, 41305532 - 41305264
Alignment:
| Q |
165 |
ttggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctgcac |
264 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||| | ||||| || | || | |||| |||||| |||||||||||||| || |||| |
|
|
| T |
41305532 |
ttgggaagcttccaatcaaagttataaagtaattcagcaagaggaagttcaacatttgataaggcaaatgcaatgcccggacacatcctccttccagcac |
41305433 |
T |
|
| Q |
265 |
caaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttggatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
41305432 |
caaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcagcttcaacccaatactttggatc |
41305333 |
T |
|
| Q |
365 |
tcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggca |
433 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||||||| || || |||||||| |||| |||||||| |
|
|
| T |
41305332 |
tcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggca |
41305264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 62 - 434
Target Start/End: Original strand, 31177513 - 31177885
Alignment:
| Q |
62 |
atatcaaatacgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattcttcatt |
161 |
Q |
| |
|
|||| ||| ||||||| | |||||||||||||||| ||| |||||||||| | | || ||| ||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
31177513 |
atattaaagacgacgagttataggaatcaagcataggtcatgttttcttactacagcaagcccaaatgactcagtcatatctagttcttcattcttcatt |
31177612 |
T |
|
| Q |
162 |
tcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctg |
261 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || |||||| |||||||||||||| || || || | |
|
|
| T |
31177613 |
ccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccag |
31177712 |
T |
|
| Q |
262 |
caccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttgg |
361 |
Q |
| |
|
|||| || |||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||| ||| |
|
|
| T |
31177713 |
caccgaacggtatgtactcaaagtttgtacctttgaaatcaattgtgctattaacaaacctctcgggtttaaaactctcagcttctgcccaatacctttc |
31177812 |
T |
|
| Q |
362 |
atctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcat |
434 |
Q |
| |
|
|||||||||||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| |
|
|
| T |
31177813 |
atctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcat |
31177885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 117 - 383
Target Start/End: Complemental strand, 41311473 - 41311207
Alignment:
| Q |
117 |
gtaatccctaatgattcagtcatatccaactcttcattcttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaa |
216 |
Q |
| |
|
|||||||| ||||| |||| |||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||| | ||||| |
|
|
| T |
41311473 |
gtaatcccaaatgactcagccatatctagttcttcattcttcattttattgggaagcttccaatcaaaccggtaaagtaattgagcaagaggtagctcaa |
41311374 |
T |
|
| Q |
217 |
cgttaggtaggccaaacataatgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaac |
316 |
Q |
| |
|
||| |||||| |||| ||| || |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
41311373 |
tgtttggtagggcaaatgcaattccgggacacatcctccttccagcaccaaatggtatgtattcaaagtccgtgcctttgaattcaattgtgctattaac |
41311274 |
T |
|
| Q |
317 |
aaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttccaattgccaaagca |
383 |
Q |
| |
|
||||||||| ||||| || |||||||||| |||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
41311273 |
aaacctctcaggtttaaatctctcagcttcaacccaataccttggatctcttccaatagcccaagca |
41311207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 126 - 429
Target Start/End: Complemental strand, 41338040 - 41337737
Alignment:
| Q |
126 |
aatgattcagtcatatccaactcttcattcttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggta |
225 |
Q |
| |
|
||||||||||||||||| | |||| || ||||| |||| | ||| |||||||||||||| ||||| || |||||||||||| |||||| || || | |
|
|
| T |
41338040 |
aatgattcagtcatatcaagttcttgatggctcattccatttggaagtttccaatcaaagtgataaagcaacttagcaagaggcagctcaacattgggca |
41337941 |
T |
|
| Q |
226 |
ggccaaacataatgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctc |
325 |
Q |
| |
|
| |||| ||| |||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41337940 |
aggcaaatgcaatacctggacacatccttcttccagcaccaaatggtattaattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctc |
41337841 |
T |
|
| Q |
326 |
gggtttgaaattctcagcttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccatta |
425 |
Q |
| |
|
||||| ||| |||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
41337840 |
aggtttaaaactctcagcttcaacccaatactttggatctcttccaattgcccaaacattgacagcaacccttgtcttagctgggatctcatacccattg |
41337741 |
T |
|
| Q |
426 |
attt |
429 |
Q |
| |
|
|||| |
|
|
| T |
41337740 |
attt |
41337737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 71 - 434
Target Start/End: Original strand, 31187585 - 31187948
Alignment:
| Q |
71 |
acgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattcttcatttcattggaa |
170 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||| || | ||||| ||||| ||||||||||| | ||||||||||||||| |||| | | |
|
|
| T |
31187585 |
acgacgagtaataggaatcaagcataggtcatgttttcttcctatagccatcccaaatgactcagtcatatctagttcttcattcttcattccattagga |
31187684 |
T |
|
| Q |
171 |
agcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctgcaccaaatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| ||| | || |||||| |||||||||||||| || || || ||||| || | |
|
|
| T |
31187685 |
agcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccagcaccgaacg |
31187784 |
T |
|
| Q |
271 |
gtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttcc |
370 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| | ||||||||| ||||| ||| |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
31187785 |
gtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcagcttctgcccaatacctttcatctcttcc |
31187884 |
T |
|
| Q |
371 |
aattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcat |
434 |
Q |
| |
|
||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| |
|
|
| T |
31187885 |
aattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcat |
31187948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 71 - 434
Target Start/End: Complemental strand, 31226193 - 31225830
Alignment:
| Q |
71 |
acgacgaataataggaatcaagcataaaacatattttcttactgctgtaatccctaatgattcagtcatatccaactcttcattcttcatttcattggaa |
170 |
Q |
| |
|
||||||| | |||||||||||||| | ||| ||||||| || | | || ||| ||||| ||||||||||| | ||||||||||||||| |||| | | |
|
|
| T |
31226193 |
acgacgagtgataggaatcaagcacaggtcattttttcttcctacagaaagcccaaatgactcagtcatatctagttcttcattcttcattccattagga |
31226094 |
T |
|
| Q |
171 |
agcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttaggtaggccaaacataatgcctggacacatcctcctccctgcaccaaatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| ||| | || |||||| |||||||||||||| || || || ||||| || | |
|
|
| T |
31226093 |
agcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccagcaccgaacg |
31225994 |
T |
|
| Q |
271 |
gtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttcc |
370 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| | ||||||||| ||||| ||| |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
31225993 |
gtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcagcttctgcccaatacctttcatctcttcc |
31225894 |
T |
|
| Q |
371 |
aattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcat |
434 |
Q |
| |
|
||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| |
|
|
| T |
31225893 |
aattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcat |
31225830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 41329592 - 41329543
Alignment:
| Q |
147 |
tcttcattcttcatttcattggaaagcttccaatcaaagtggtaaagtaa |
196 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
41329592 |
tcttcattattcattccattggaaagctttcaatcaaagtcataaagtaa |
41329543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 116 - 418
Target Start/End: Original strand, 17248447 - 17248749
Alignment:
| Q |
116 |
tgtaatccctaatgattcagtcatatccaactcttcattcttcatttcattggaaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactca |
215 |
Q |
| |
|
||||||||| ||||| || |||||||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
17248447 |
tgtaatcccaaatgactcggtcatatctagatcttcattcttcatttcattgggaagcttccaatcaaaatggtaaagtaattgagcaagaggcaactca |
17248546 |
T |
|
| Q |
216 |
acgttaggtaggccaaacataatgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaa |
315 |
Q |
| |
|
| ||| |||| |||||| |||||| ||||| |||||||| || |||||||||||||||||||| || | ||||||||||||||||||| ||||||| |
|
|
| T |
17248547 |
atgttgggtatgccaaatgcaatgcccggacaaatcctccttccagcaccaaatggtatgtattcgaaattcatgcctttgaaatcaattgggctattaa |
17248646 |
T |
|
| Q |
316 |
caaacctctcgggtttgaaattctcagcttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatc |
415 |
Q |
| |
|
|||||| || ||||||||| |||||||||| |||||||| ||| ||||||||||||||||| || |||| ||| |||||| ||||| || || ||||| |
|
|
| T |
17248647 |
aaaacctttcaggtttgaaactctcagcttcaacccaatacctttgatctcttccaattgcccaaacattaacagcaacccttgtcttagctggaatatc |
17248746 |
T |
|
| Q |
416 |
ata |
418 |
Q |
| |
|
||| |
|
|
| T |
17248747 |
ata |
17248749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 22941698 - 22941642
Alignment:
| Q |
131 |
ttcagtcatatccaactcttcattcttcatttcattggaaagcttccaatcaaagtg |
187 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||| ||||||| ||| |||||||||||||| |
|
|
| T |
22941698 |
ttcactcatgtccaaatcttcatttttcatctcattgggaagtttccaatcaaagtg |
22941642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 22971931 - 22971999
Alignment:
| Q |
235 |
taatgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaa |
303 |
Q |
| |
|
||||||||||||| || || || || ||||||||||| ||||| ||||| | ||| ||||||||||||| |
|
|
| T |
22971931 |
taatgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa |
22971999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 22986259 - 22986347
Alignment:
| Q |
237 |
atgcctggacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctc |
325 |
Q |
| |
|
||||| ||||| || ||||| || ||||||||||| ||||| ||||| | || |||||||||||||| | ||||| || ||||||||| |
|
|
| T |
22986259 |
atgccaggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctc |
22986347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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