View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_14 (Length: 484)
Name: NF0854_low_14
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 258 - 475
Target Start/End: Complemental strand, 6330251 - 6330034
Alignment:
| Q |
258 |
atcaacacaggaagtgaagctaacattctctacatgtcagcattcttgaaaatgaggctatcagagtcaatgctgcaaccgtgtgatgcatttctgaaag |
357 |
Q |
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| T |
6330251 |
atcaacacaggaagtgaagctaacattctctacatgtcagcattcttgaaaatgaggctatcagagtcaatgctgcaaccgtgtgatgcatttctgaaag |
6330152 |
T |
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| Q |
358 |
atgttcttggaaaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattggtatgcctactct |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6330151 |
atgttcttggaaaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattggtatgcctactct |
6330052 |
T |
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| Q |
458 |
tagtgatttgagaataat |
475 |
Q |
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||||||||||||| |||| |
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| T |
6330051 |
tagtgatttgagagtaat |
6330034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 6330462 - 6330275
Alignment:
| Q |
74 |
aactctgtcaaagaagatggaaaaaagcaagaagaaacgaagaaaggatcatagttcaacaagaaacgatgatgatggtagtgacattattgaaccagaa |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6330462 |
aactctgtcaaagaagatggaaaaaagcaagaagaaacgaagaaaggatcatagttcaacaagaaacgatgatgatggtagtgacattattgaaccagaa |
6330363 |
T |
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| Q |
174 |
aacatgccaatatcgttttcaaacaaagactatgcattattcaaaggaactagtgctcctcttcctatggtcatcaaactccaaatcaaca |
264 |
Q |
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| T |
6330362 |
aacatgccaatatcgttttcaaccaaagactatgc---attcaaaggaactagtgctcttcttcctatggtcatcaaacaccaaatcaaca |
6330275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 6318133 - 6318101
Alignment:
| Q |
232 |
ctcttcctatggtcatcaaactccaaatcaaca |
264 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
6318133 |
ctcttcctatggtaatcaaactccaaatcaaca |
6318101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 6327375 - 6327343
Alignment:
| Q |
232 |
ctcttcctatggtcatcaaactccaaatcaaca |
264 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
6327375 |
ctcttcctatggtaatcaaactccaaatcaaca |
6327343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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