View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_16 (Length: 458)
Name: NF0854_low_16
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 24868717 - 24868260
Alignment:
| Q |
1 |
acaagaaaaagtattactcccatattgaagatgaaacttggaa-------gtgtcaaggctagcttaattaattcctagtttactctacaccagatgaat |
93 |
Q |
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| T |
24868717 |
acaagaaaaagtattactcccatattgaagatgaaacttggaacttggaagtgtcaatgctagcttaattaattcctagtttactctacaccagatgaat |
24868618 |
T |
|
| Q |
94 |
gattcctaccagtttgtttcacccaaatctcattaagcaacattaaatctagttgatatctaacaagttttgactaactagcattacttaacaggtcatg |
193 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24868617 |
gattcctaccagtttgtttcatccaaatctcattaagcaacattaaatctagttgatatctaacaagttttgactaactagcattacttaacaggtcaag |
24868518 |
T |
|
| Q |
194 |
ttgcagttacacaagtgagcaaaatatataaagattttccaattcagattactggcctcgacaagatataggttcaagcccttgagtttctggaaagtta |
293 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24868517 |
ttgcaattacacaagtgagcaaaatatataaagactttccaattcagattactggccttgacaagatataggttcaagcccttgagtttctggaaagtta |
24868418 |
T |
|
| Q |
294 |
ttctagagaatgttcaatgccaactattctactaggacatgtcctactattgtgtccctctttctggcacaatcgacatttgtatactctctgagatgtc |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24868417 |
ttctagagaatgttcaatgccaactattctactaggacatgtcctactattgtgtccctctttctggcacaatcgacatttgtatactctctgagatgtc |
24868318 |
T |
|
| Q |
394 |
atatccattcttttatttgaaataacttgagggcatgttcttcggttatggccatatt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24868317 |
atatccattcttttatttgaaataacttgagggcatgttcttcggttatggccatatt |
24868260 |
T |
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