View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_19 (Length: 393)
Name: NF0854_low_19
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 30935502 - 30935141
Alignment:
| Q |
19 |
ccttcaactctgcatcacagaggacttgcaatgaccctatgaagttgcggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgat |
118 |
Q |
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| T |
30935502 |
ccttcaactctgcatcacagaggacttgcaatgaccctatgaagttgcggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgac |
30935403 |
T |
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| Q |
119 |
atatttccaaagcagaataaattgaagtggcaaatcttcccctatgagcaacttagaaaagccacaaattattttgatgaagctcacattcttgaaaaga |
218 |
Q |
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| T |
30935402 |
atatttccaaagcagaataaattgaagtggcaaatcttcccctatgagctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaaga |
30935303 |
T |
|
| Q |
219 |
aaggctctgccactatatattatggtaagcggtcttttacctgnnnnnnnnntgaatgaatagacgatatagtctctgaatttgtaaatatcgttcaatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
30935302 |
aaggctctgccactatatattatggtaagcggtcttttacctg-aaaaaaaatgaatgaatagacaagatagtctctgaatttgtaaatatcgttcaatt |
30935204 |
T |
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| Q |
319 |
tagtctttgaatttgacgtaagatcacaatagactttaggtttattttgcgttatttggtttc |
381 |
Q |
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| T |
30935203 |
tagtctttgaatttttcgtaagatcacagtagactttgggtttattttgcgttatttggtttc |
30935141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 30994410 - 30994106
Alignment:
| Q |
22 |
tcaactctgcatcacagaggacttgcaat--gaccctatgaagttgcggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgata |
119 |
Q |
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| T |
30994410 |
tcaactatgcttcacataggacgtgcaatatgaccctacgaggttggggaaatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaa |
30994311 |
T |
|
| Q |
120 |
tatttccaaagcagaataaattgaagtggcaaatcttcccctatgagcaacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaa |
219 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30994310 |
catttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaacttagaaaagccacaaattattttgatgaagctcacattcttgataagaa |
30994211 |
T |
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| Q |
220 |
aggctctgccactatatattatggtaagcggtcttttacctg--nnnnnnnnntgaatgaatagacgatatagtctctgaatttgtaaatatcgttcaat |
317 |
Q |
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|||||| ||||| |||||||||||||| || ||||||||| ||| |||||||| || |||||||||| ||||||| ||||||||||| |
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| T |
30994210 |
aggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaactttgagtgaatagaaaatttagtctctgagtttgtaactatcgttcaat |
30994111 |
T |
|
| Q |
318 |
ttagt |
322 |
Q |
| |
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||||| |
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| T |
30994110 |
ttagt |
30994106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 30965612 - 30965503
Alignment:
| Q |
22 |
tcaactctgcatcacagaggacttgcaatgaccctatgaagttgcggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgatata |
121 |
Q |
| |
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|||||||||| || |||||||| |||||||||||||||| |||| || |||| |||| ||||||| |||||||||||||||||||||||||||||| | | |
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| T |
30965612 |
tcaactctgcttcgcagaggacgtgcaatgaccctatgaggttggggaaatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaaca |
30965513 |
T |
|
| Q |
122 |
tttccaaagc |
131 |
Q |
| |
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|||||||||| |
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| T |
30965512 |
tttccaaagc |
30965503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 30965507 - 30965351
Alignment:
| Q |
176 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgnnnnnnnnntgaat |
275 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||| || ||| | |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaaatttgagt |
30965408 |
T |
|
| Q |
276 |
gaatagacgatatagtctctgaatttgtaaatatcgttcaatttagtctttgaattt |
332 |
Q |
| |
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||||||| || |||||||||||||||||| ||| | |||||||||| | ||||||| |
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| T |
30965407 |
gaatagaaaatttagtctctgaatttgtaactattggtcaatttagtttctgaattt |
30965351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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