View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_23 (Length: 367)
Name: NF0854_low_23
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 52794124 - 52794369
Alignment:
| Q |
23 |
gagatgaaatacgatttgtttttagaaacaannnnnnnatcggtatttatagaaatgatttgattttgttgatgaatcaaacgcgtggtaattaatggct |
122 |
Q |
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| T |
52794124 |
gagatgaaatacgatttgtttatagaaacaatttttttatcggtatttctagaaaggatttgattttgttgatgaatcaaacgcgtggtaata---ggct |
52794220 |
T |
|
| Q |
123 |
tacttgtacaataccattttatatgtggtactttactgattattgaatgatttgcttaaattagagatgcagtaccattcnnnnnnnnggaaatgaattg |
222 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52794221 |
tacttgtgcaataccattttatatgtggtactttactgattattgaatgatttgcttaaattagagatgcagtaccattctttttattggaaatgaattg |
52794320 |
T |
|
| Q |
223 |
attttgttcataatacaaacgcgtccgattttgcattcactgcatacat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52794321 |
attttgttcataatacaaacgcgtccgattttgcattcactgcatacat |
52794369 |
T |
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