View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0854_low_24 (Length: 365)
Name: NF0854_low_24
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23678470 - 23678726
Alignment:
| Q |
1 |
aagtttggttggaggtttgttttatctaacagctacacgacctgattcaatgtttgctgctagtttactctcaaggtttatgagcaaaccgagtcactta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23678470 |
aagtttggttggaagtttgttttatctaacagctacacgacccgatttaatgtttgctgctagtttactctcaaggtttatgagtaaaccgagtcactta |
23678569 |
T |
|
| Q |
101 |
cac----gagctgcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
196 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23678570 |
caccttggagcagcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
23678669 |
T |
|
| Q |
197 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23678670 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
23678726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 24050746 - 24051002
Alignment:
| Q |
1 |
aagtttggttggaggtttgttttatctaacagctacacgacctgattcaatgtttgctgctagtttactctcaaggtttatgagcaaaccgagtcactta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24050746 |
aagtttggttggaagtttgttttatctaacagctacacgacccgatttaatgtttgctgctagtttactctcaaggtttatgagtaaaccgagtcactta |
24050845 |
T |
|
| Q |
101 |
cac----gagctgcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
196 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24050846 |
caccttggagcagcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
24050945 |
T |
|
| Q |
197 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24050946 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
24051002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 22134945 - 22134994
Alignment:
| Q |
202 |
agtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgt |
251 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
22134945 |
agtgattgggctggaagtgttgatgattccaagagcacttctggttatgt |
22134994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 26410356 - 26410612
Alignment:
| Q |
1 |
aagtttggttggaggtttgttttatctaacagctacacgacctgattcaatgtttgctgctagtttactctcaaggtttatgagcaaaccgagtcactta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26410356 |
aagtttggttggaagtttgttttatctaacagctacacgacccgatttaatgtttgctgctagtttactctcaaggtttatgagtaaaccgagtcactta |
26410455 |
T |
|
| Q |
101 |
cac----gagctgcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
196 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26410456 |
caccttggagcagcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
26410555 |
T |
|
| Q |
197 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26410556 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
26410612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27206683 - 27206427
Alignment:
| Q |
1 |
aagtttggttggaggtttgttttatctaacagctacacgacctgattcaatgtttgctgctagtttactctcaaggtttatgagcaaaccgagtcactta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27206683 |
aagtttggttggaagtttgttttatctaacagctacacgacccgatttaatgtttgctgctagtttactctcaaggtttatgagtaaaccgagtcactta |
27206584 |
T |
|
| Q |
101 |
cac----gagctgcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
196 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27206583 |
caccttggagcagcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggttttaaaagaattctaaactcgaagttaaaggctact |
27206484 |
T |
|
| Q |
197 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27206483 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
27206427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 26898270 - 26898014
Alignment:
| Q |
1 |
aagtttggttggaggtttgttttatctaacagctacacgacctgattcaatgtttgctgctagtttactctcaaggtttatgagcaaaccgagtcactta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26898270 |
aagtttggttggaagtttgttttatctaacagctacacgacccgatttaatatttgctgctagtttactctcaaggtttatgagtaaaccgagtcactta |
26898171 |
T |
|
| Q |
101 |
cac----gagctgcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaagaattctaaactcgaagttaaaggctact |
196 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
26898170 |
caccttggagcagcaaaaggagttctaaggtatatcatgggaaccatggagcatggaatcaggtttcaaaataattctaaactcgaagttaaaggctact |
26898071 |
T |
|
| Q |
197 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26898070 |
gtgacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttatgtgt |
26898014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 35172076 - 35172173
Alignment:
| Q |
240 |
ttctggttatgtgtcacatggtatgtggtatatattttacttagcacacttcaaatatttttcagatttttacaactggcataatggatgccctttct |
337 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35172076 |
ttcttgttatgtgtcacatggtatgtggtatatattttacttagcacacttcaaatatttttcagatttttacaactggcataatggatgccctttct |
35172173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 31084589 - 31084639
Alignment:
| Q |
199 |
gacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttat |
249 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||| || |||||| |
|
|
| T |
31084589 |
gacagtgattgggcaggatgtgttgatgacatgagaagcacctcaggttat |
31084639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 48659059 - 48659109
Alignment:
| Q |
199 |
gacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttat |
249 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||| || |||||| |
|
|
| T |
48659059 |
gacagtgattgggcaggatgtgttgatgacatgagaagcacctcaggttat |
48659109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 9309812 - 9309862
Alignment:
| Q |
199 |
gacagtgattgggctggaagtgttgatgacatgaaaagcacttctggttat |
249 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||| || |||||| |
|
|
| T |
9309812 |
gacagtgattgggcaggatgtgttgatgacatgagaagcacctcaggttat |
9309862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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