View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_28 (Length: 336)
Name: NF0854_low_28
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 2745633 - 2745968
Alignment:
| Q |
1 |
tattagcaatcatagcaacggtttcagcaggattagtagagattttccggctaaagtatgagataaaagaagnnnnnnnttgtagccgttgcgaagggac |
100 |
Q |
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| T |
2745633 |
tattagcaatcatagcaatggtttcagcaggattagtagagattttccggctaaagtatgcgataaaagaagaaaaaaattgtagccattgcgaagggac |
2745732 |
T |
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| Q |
101 |
gagttcattgtcgatattttggcaagtaccgcaatatgtactaataggagcatcagaagttttcatgtatgttggtcaattggagtttttcaattcacaa |
200 |
Q |
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| T |
2745733 |
gagttcattatcgatattttggcaagtaccgcaatatgtactaataggagcatcagaagttttcatgtatgttggtcaattggagtttttcaattcacag |
2745832 |
T |
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| Q |
201 |
gcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatatcattaggaaactatgttagtagcttgcttgttgcaattgtgatgaaga |
300 |
Q |
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| T |
2745833 |
gcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatatcattaggaaactatgttagtagcttgcttgttgcaattgtgatgaaga |
2745932 |
T |
|
| Q |
301 |
tatctactagaaatgaaggcatgcttggttggattc |
336 |
Q |
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| T |
2745933 |
tatctactagaaatgaaggcatgcttggttggattc |
2745968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 397803 - 397921
Alignment:
| Q |
153 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaagcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
252 |
Q |
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| T |
397803 |
tcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctgatggcataaaaagctttggaagttcactttgtatggcatcaattt |
397902 |
T |
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| Q |
253 |
cattaggaaactatgttag |
271 |
Q |
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| T |
397903 |
ctcttggaaactatgttag |
397921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 3802981 - 3802863
Alignment:
| Q |
153 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaagcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
252 |
Q |
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| T |
3802981 |
tcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatggcttcaattt |
3802882 |
T |
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| Q |
253 |
cattaggaaactatgttag |
271 |
Q |
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| T |
3802881 |
ctcttggaaactatgttag |
3802863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 52809622 - 52809491
Alignment:
| Q |
153 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaagcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
252 |
Q |
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||||| |||||||||||||| |||||||||||||| || ||| |||||||| |||||| | ||||| ||||| ||| ||||||||||| ||||||| | |
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| T |
52809622 |
tcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaattt |
52809523 |
T |
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| Q |
253 |
cattaggaaactatgttagtagcttgcttgtt |
284 |
Q |
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| T |
52809522 |
ctcttggaaactatgtgagtagcatgcttgtt |
52809491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 40744136 - 40744245
Alignment:
| Q |
135 |
tatgtactaataggagcatcagaagttttcatgtatgttggtcaattggagtttttcaattcacaagcacctgatggattgaaaagctttggaagtgcac |
234 |
Q |
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|||| ||| |||||||| || || ||||| |||||||| || ||||| || ||||||||| | ||| ||||||||||||| || |||||||||||||||| |
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| T |
40744136 |
tatgcacttataggagcttctgaggtttttatgtatgtaggacaattagaatttttcaatgctcaaacacctgatggattaaagagctttggaagtgcac |
40744235 |
T |
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| Q |
235 |
tttgtatgac |
244 |
Q |
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|||| ||||| |
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| T |
40744236 |
tttgcatgac |
40744245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 4708452 - 4708304
Alignment:
| Q |
135 |
tatgtactaataggagcatcagaagttttcatgtatgttggtcaattggagtttttcaattcacaagcacctgatggattgaaaagctttggaagtgcac |
234 |
Q |
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|||| ||| |||||||| || || || || |||||||| || || || ||||| |||||| | ||| |||||||||| || || || || |||||||||| |
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| T |
4708452 |
tatgcacttataggagcttctgaggtgtttatgtatgtagggcagttagagttcttcaatgctcaaacacctgatggcttaaagagtttcggaagtgcac |
4708353 |
T |
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| Q |
235 |
tttgtatgacttcaatatcattaggaaactatgttagtagcttgcttgt |
283 |
Q |
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| T |
4708352 |
tttgcatgacatccatttcccttggcaactatgtaagtagcttacttgt |
4708304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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