View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_36 (Length: 303)
Name: NF0854_low_36
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 289
Target Start/End: Complemental strand, 20998216 - 20998058
Alignment:
| Q |
131 |
aaatgaaaagaagtataactatacttacatcactttcagattagttaactttccaagatattcgggcaatgttccactgatattgcaatttctcaatact |
230 |
Q |
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| T |
20998216 |
aaatggaaagaagcataactatacttacatcacttccagattagttaactttccaagatattcgggcaatgctccactgatattgcaacttctcaatact |
20998117 |
T |
|
| Q |
231 |
ctg-gaaacaataagaccatatataaatatattgcagaaatttctcctttatttttgttt |
289 |
Q |
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||| || ||| ||||||||| |||||||| |||| |||||||||||| ||||||||||| |
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| T |
20998116 |
ctgcgagccaacaagaccatacataaatattttgc-gaaatttctcctctatttttgttt |
20998058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 21013147 - 21013305
Alignment:
| Q |
131 |
aaatgaaaagaagtataactatacttacatcactttcagattagttaactttccaagatattcgggcaatgttccactgatattgcaatttctcaatact |
230 |
Q |
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||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
21013147 |
aaatggaaagaagcataactatacttacatcacttccagattagttaactttccaagatattcgggcaatgctccactgatattgcaacttctcaatact |
21013246 |
T |
|
| Q |
231 |
ctg-gaaacaataagaccatatataaatatattgcagaaatttctcctttatttttgttt |
289 |
Q |
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||| || ||| ||||||||| |||||||| |||| |||||||||||| ||||||||||| |
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| T |
21013247 |
ctgcgagccaacaagaccatacataaatattttgc-gaaatttctcctctatttttgttt |
21013305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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