View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0854_low_37 (Length: 302)

Name: NF0854_low_37
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0854_low_37
NF0854_low_37
[»] chr4 (2 HSPs)
chr4 (72-165)||(35919911-35920004)
chr4 (165-240)||(10348330-10348405)
[»] chr2 (3 HSPs)
chr2 (72-165)||(20613285-20613378)
chr2 (71-165)||(1704558-1704653)
chr2 (72-165)||(1700140-1700234)
[»] chr8 (1 HSPs)
chr8 (99-165)||(179748-179814)
[»] chr1 (1 HSPs)
chr1 (165-240)||(48711502-48711577)
[»] chr5 (2 HSPs)
chr5 (165-237)||(22112797-22112868)
chr5 (165-237)||(27525599-27525671)
[»] scaffold0121 (1 HSPs)
scaffold0121 (177-237)||(33051-33111)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 35919911 - 35920004
Alignment:
Q  72 tataagagtttgaatggcaattgtttcaattatgtattgctgatacatgtatttaagtacaacaatatgccttggcattaagagataactacct 165  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35919911 tataagagtttgaatggcaattgttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacct 35920004  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 10348330 - 10348405
Alignment:
Q  165 tgaagtgatgcttaaaatgaattttccgatattatggcgttcctggattatggaatgtgtaacgacagcaacagct 240  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||    
T  10348330 tgaagtgatgtctaaaatgaattttccgttattatggcgtgcctggattatggagtgcgtaacgacagcaacagct 10348405  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 20613285 - 20613378
Alignment:
Q  72 tataagagtttgaatggcaattgtttcaattatgtattgctgatacatgtatttaagtacaacaatatgccttggcattaagagataactacct 165  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20613285 tataagagtttgaatggcaattgtttttattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacct 20613378  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 1704653 - 1704558
Alignment:
Q  71 gtataagagtttgaatggcaattgtttc-aattatgtattgctgatacatgtatttaagtacaacaatatgccttggcattaagagataactacct 165  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1704653 gtataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacct 1704558  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 1700234 - 1700140
Alignment:
Q  72 tataagagtttgaatggcaattgtttc-aattatgtattgctgatacatgtatttaagtacaacaatatgccttggcattaagagataactacct 165  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1700234 tataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacct 1700140  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 179814 - 179748
Alignment:
Q  99 aattatgtattgctgatacatgtatttaagtacaacaatatgccttggcattaagagataactacct 165  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  179814 aattatgtattgctgatacatgtatttaagtacaacgatatgccttagcattaagagataactacct 179748  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 48711577 - 48711502
Alignment:
Q  165 tgaagtgatgcttaaaatgaattttccgatattatggcgttcctggattatggaatgtgtaacgacagcaacagct 240  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48711577 tgaagtgatgtctaaaatgaattttccgttattatggcgtgcctggattatggagtgtgtaacgacagcaacagct 48711502  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 22112797 - 22112868
Alignment:
Q  165 tgaagtgatgcttaaaatgaattttccgatattatggcgttcctggattatggaatgtgtaacgacagcaaca 237  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  22112797 tgaagtgatgtctaaaatgaattt-ccgatattatggcgttcctggattatggagtgcgtaacgacagcaaca 22112868  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 27525671 - 27525599
Alignment:
Q  165 tgaagtgatgcttaaaatgaattttccgatattatggcgttcctggattatggaatgtgtaacgacagcaaca 237  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |||||    
T  27525671 tgaagtgatgtctaaaatgaattttccgatattatggtgttcctggattatggagtgcgtaacgacaacaaca 27525599  T

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Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 33111 - 33051
Alignment:
Q  177 taaaatgaattttccgatattatggcgttcctggattatggaatgtgtaacgacagcaaca 237  Q
    |||||||||||||||| | |||||||| || ||||||||||| ||||| |||||| |||||    
T  33111 taaaatgaattttccggtgttatggcgctcttggattatggagtgtgtcacgacaacaaca 33051  T

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