View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_38 (Length: 289)
Name: NF0854_low_38
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_38 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 30959242 - 30958961
Alignment:
| Q |
20 |
catctaaacaatcatcataattgcacgaggactttacatgttt------------attgctctcccatttacaatctcctccttcatttcccaaacacct |
107 |
Q |
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| T |
30959242 |
catctaaacaatcatcataatagcacgaggactttacatgtttctcaatatcattattgctctcccatttacaatctcctccttcacttcccaaacacct |
30959143 |
T |
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| Q |
108 |
tatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccattttcaagaaaatcatgatcaaaataatcatcataatctttcccaaaa |
207 |
Q |
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| T |
30959142 |
tgagcattcctctttcatagtataattcaactcaaaccccttatccaaaccattttcaagaaaatcatgatcaaaataatcaacataatctttcacacca |
30959043 |
T |
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| Q |
208 |
ggaaaatctgttcctactggcacttgaatatgactcatacaattccttgattcttccaacaacctatcttcattaccaacac |
289 |
Q |
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| T |
30959042 |
ggaaaatctgctcctactggcacatgaatatgactcatacaattccttgattcttccaacaacctatcttcattaccaacac |
30958961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 31012995 - 31012899
Alignment:
| Q |
72 |
ccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccattttcaaga |
168 |
Q |
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|||||||||||||||| ||||| ||||||||||| || ||||||||||||| | ||||||||| ||||||||| |||| ||||||| ||| |||| |
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| T |
31012995 |
ccatttacaatctccttcttcacttcccaaacactttgcacattcctctttcacactataattcacctcaaacccattattcaaaccacttttaaga |
31012899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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