View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0854_low_39 (Length: 288)
Name: NF0854_low_39
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 36756389 - 36756209
Alignment:
| Q |
67 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgac |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36756389 |
ctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgattatcttatttgatcagtaatttgac |
36756290 |
T |
|
| Q |
167 |
attactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatctttaagactaatcaccaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
36756289 |
attactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatcccattcatctttaagactaatcgccaa |
36756209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 36755938 - 36755822
Alignment:
| Q |
131 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
230 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
|
| Q |
231 |
ttaagactaatcaccaa |
247 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36755838 |
ttaagactaatcaccaa |
36755822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 36749063 - 36748874
Alignment:
| Q |
67 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgac |
166 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36749063 |
ctttgtactgcaatgagttttgatattttaattcttcaatttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgac |
36748964 |
T |
|
| Q |
167 |
attactcttgcaattttc---------tacgcttaattcgttcaaagttttctttaatttatctcgttcatctttaagactaatcaccaa |
247 |
Q |
| |
|
|||||||||| || |||| |||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
36748963 |
attactcttggaactttctacgtttaatacgtttaattcgtccaaagttttctttaatttatcccattcatctttaagactaatcaccaa |
36748874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 36767406 - 36767344
Alignment:
| Q |
181 |
tttctacgcttaattcgttcaaagttttctttaatttatctcgttcatctttaagactaatca |
243 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
36767406 |
tttccacgcttaattcgtccaaagatttctttaaattatcccgttcatctttaagactgatca |
36767344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 36772064 - 36772014
Alignment:
| Q |
67 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
36772064 |
ctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 386 times since January 2019
Visitors: 6128