View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_40 (Length: 278)
Name: NF0854_low_40
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 50728790 - 50728971
Alignment:
| Q |
40 |
aatataagaagacaacttaaaaaacttgaggattatacatgaatttagccacccttactaacttatgggtcgctacatttgtgtgacgtagtatatatat |
139 |
Q |
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| T |
50728790 |
aatacaagaagacaacttaaaaaacttgaggattatacatgaatttagccacccttactaacttatgggtcactacatttgtgtgacgtagtatatatat |
50728889 |
T |
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| Q |
140 |
aatgcnnnnnnnnnnnacaaagaatatgtaatgcttgatgcttttcattaagacacaaacatgcagatttcatggattgctttt |
223 |
Q |
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| T |
50728890 |
aatgc--tttttttttacaaagaatgtgtaatgcttgatgcttttcattaagacacaaacatgcagatttcatggattgctttt |
50728971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 50736804 - 50736985
Alignment:
| Q |
40 |
aatataagaagacaacttaaaaaacttgaggattatacatgaatttagccacccttactaacttatgggtcgctacatttgtgtgacgtagtatatatat |
139 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50736804 |
aatacaagaagacaacttaaaaaacttgaggattatacatgaatttagccacccttactaacttatgggtcactacatttgtgtgacgtagtatatatat |
50736903 |
T |
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| Q |
140 |
aatgcnnnnnnnnnnnacaaagaatatgtaatgcttgatgcttttcattaagacacaaacatgcagatttcatggattgctttt |
223 |
Q |
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| T |
50736904 |
aatgc--tttttttttacaaagaatgtgtaatgcttgatgcttttcattaagacacaaacatgcagatttcatggattgctttt |
50736985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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