View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_42 (Length: 276)
Name: NF0854_low_42
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 37096741 - 37096990
Alignment:
| Q |
11 |
cagtgacaatactagcaccaaaataatagaaattcttaaaaactcttc------------aaatacatgtaataataattttattgtactctttcggtct |
98 |
Q |
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| T |
37096741 |
cagtgacaatactagcaccaaaataatagaaattcttaaaaactcttcaaattaaacttcaaatacatgtaataataattttgttgtactctttcggtct |
37096840 |
T |
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| Q |
99 |
tacttgttattctcattgactacaaccttgttgtctgtctgtcccaataagctgctcatagatcgggctttaaccattccaagcttcattctcttctttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37096841 |
tacttgttattctcattgactacaaccttgttgtctgtctgtcccaataagctgctcatagatcgggctttaaccattccaagcttcattctcttctttg |
37096940 |
T |
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| Q |
199 |
caattaccactggcttcttctcatcatcattatccaacttatcgtcattc |
248 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
37096941 |
caattaccactggcttcttctcatcatcattacccaaggtatcgtcattc |
37096990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 37090432 - 37090623
Alignment:
| Q |
57 |
tcaaatacatgtaataataattttattgtactctttcggtcttacttgttattctcattgactacaaccttgttgtctgtctgtcccaataagctgctca |
156 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
37090432 |
tcaaatacatgtaataataattttattgtaatctttcggtcttacttgttattctcattgactacaaccttgttgtctgtctgacccaataagctgatca |
37090531 |
T |
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| Q |
157 |
tagatcgggctttaaccattccaagcttcattctcttctttgcaattaccactggcttcttctcatcatcattatccaacttatcgtcattc |
248 |
Q |
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| T |
37090532 |
tagaacgggctttaaccattccaagcttcattctcttctttgcaattaccactggcttcttctcatcatcattacccaaggtatcgtcattc |
37090623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 23187118 - 23187203
Alignment:
| Q |
138 |
tgtcccaataagctgctcatagatcgggctttaaccattccaagcttcattctcttctttgcaattaccactggcttcttctcatc |
223 |
Q |
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|||||||| || || ||||| ||||| ||||| |||||||||| |||||| |||||||| || || | || |||||||||||||| |
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| T |
23187118 |
tgtcccaacaaactactcatcgatcgcgctttcaccattccaatcttcatcctcttcttcgcgataatcaacggcttcttctcatc |
23187203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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