View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0854_low_43 (Length: 266)

Name: NF0854_low_43
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0854_low_43
NF0854_low_43
[»] chr2 (9 HSPs)
chr2 (1-136)||(17822304-17822439)
chr2 (5-136)||(17874360-17874491)
chr2 (4-136)||(17872985-17873117)
chr2 (3-79)||(17827420-17827496)
chr2 (171-238)||(17822477-17822547)
chr2 (58-136)||(31555615-31555691)
chr2 (189-238)||(17827503-17827551)
chr2 (171-238)||(17874500-17874566)
chr2 (189-243)||(17873146-17873200)
[»] scaffold1017 (1 HSPs)
scaffold1017 (58-136)||(2350-2429)
[»] chr1 (6 HSPs)
chr1 (58-136)||(15474878-15474956)
chr1 (55-92)||(17504406-17504443)
chr1 (171-232)||(43879962-43880023)
chr1 (85-133)||(25182684-25182732)
chr1 (58-98)||(27579559-27579599)
chr1 (189-237)||(44066490-44066538)
[»] chr7 (3 HSPs)
chr7 (55-136)||(22701677-22701757)
chr7 (58-136)||(48103081-48103159)
chr7 (173-234)||(29693268-29693329)
[»] chr8 (1 HSPs)
chr8 (58-116)||(9788614-9788672)
[»] chr5 (2 HSPs)
chr5 (58-136)||(30841222-30841299)
chr5 (58-136)||(26620985-26621064)
[»] chr4 (4 HSPs)
chr4 (59-136)||(28808445-28808522)
chr4 (1-47)||(28808363-28808409)
chr4 (58-135)||(42398546-42398623)
chr4 (59-136)||(54983178-54983255)
[»] chr3 (3 HSPs)
chr3 (12-61)||(13475590-13475639)
chr3 (58-136)||(21082661-21082741)
chr3 (58-98)||(297459-297500)
[»] scaffold0013 (1 HSPs)
scaffold0013 (55-98)||(101390-101433)
[»] chr6 (1 HSPs)
chr6 (18-62)||(31204280-31204324)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17822304 - 17822439
Alignment:
Q  1 tgtcttttttaccttcaaaaattactctcaactttcaatgcaaatattacatataataaaatgtaacaaattgtacatgtctgattttttccttatcact 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17822304 tgtcttttttaccttttaaaattactctcaactttcaatgcaaatattacatataataaaatgtaacaaattgtacatgtccgattttttccttatcact 17822403  T
Q  101 tagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||| |||||||||||||||||||||||||||||    
T  17822404 tagaaaagataatagaagaaagtgaattcaaatatt 17822439  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 17874360 - 17874491
Alignment:
Q  5 ttttttaccttcaaaaattactctcaactttcaatgcaaatattacatataataaaatgtaacaaattgtacatgtctgattttttccttatcacttaga 104  Q
    |||||||||||| |||||||  ||||||||||||||||||||  |||||||||||||||||| | |||||| ||||| |||||||||||||||| |||||    
T  17874360 ttttttaccttccaaaattatcctcaactttcaatgcaaatagcacatataataaaatgtaatagattgtatatgtccgattttttccttatcatttaga 17874459  T
Q  105 aatgataatagaagaaagtgaattcaaatatt 136  Q
    || |||||| ||||||||| ||||||||||||    
T  17874460 aaagataatggaagaaagtaaattcaaatatt 17874491  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 17872985 - 17873117
Alignment:
Q  4 cttttttaccttcaaaaattactctcaactttcaatgcaaatattacatataataaaatgtaacaaattgtacatgtctgattttttccttatcacttag 103  Q
    ||||||||| ||  |||||||  |||||||||||||||||||| || |||||||||||||||||||||| ||||||||  ||| |||| |||||  ||||    
T  17872985 cttttttacattgtaaaattatcctcaactttcaatgcaaatagtatatataataaaatgtaacaaattttacatgtcctattgtttctttatcttttag 17873084  T
Q  104 aaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||| |||||| |||||||||||||| |||||||    
T  17873085 aaaagataatggaagaaagtgaatttaaatatt 17873117  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 17827420 - 17827496
Alignment:
Q  3 tcttttttaccttcaaaaattactctcaactttcaatgcaaatattacatataataaaatgtaacaaattgtacatg 79  Q
    |||||||||||||  |||||||   ||||||||||||| |||||  |||||||||||||||||||| ||||||||||    
T  17827420 tcttttttacctttcaaaattatcttcaactttcaatgtaaatagcacatataataaaatgtaacatattgtacatg 17827496  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 17822477 - 17822547
Alignment:
Q  171 tgtaacaaacacaatatatttttta-ttatcacacaaaatatatctcgtaagaa--acacgatatgagtat 238  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||  |||||||||||||||    
T  17822477 tgtaacaaacacaatatttttttttgttatcacacaaaatatatcacgtaagaaacacacgatatgagtat 17822547  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 31555691 - 31555615
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||||||||||||| |  |||| |||||||||||||||| ||| ||| |||||| || || ||||||||||||||||    
T  31555691 aaaatgtaacaaattgaa--tgtccgattttttccttatcatttaaaaaagataatggatgagagtgaattcaaatatt 31555615  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 17827503 - 17827551
Alignment:
Q  189 ttttttattatcacacaaaatatatctcgtaagaaacacgatatgagtat 238  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  17827503 ttttttattatcacacaaaatatatcatgtaagaaaca-gatatgagtat 17827551  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 17874500 - 17874566
Alignment:
Q  171 tgtaacaaacacaatatattttttattatcacacaaaatatatctcgtaagaaacacgatatgagtat 238  Q
    ||||||||||||||||| | ||||||  |  ||||||||||||| ||||| |||||||||||||||||    
T  17874500 tgtaacaaacacaatat-tcttttatgttatcacaaaatatatcacgtaacaaacacgatatgagtat 17874566  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 17873146 - 17873200
Alignment:
Q  189 ttttttattatcacacaaaatatatctcgtaagaaacacgatatgagtatgatga 243  Q
    |||||| |||||| |||||||||||| ||||| |||||||||| |||||| ||||    
T  17873146 ttttttgttatcatacaaaatatatcacgtaacaaacacgatacgagtataatga 17873200  T

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Target: scaffold1017 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 2429 - 2350
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgatttttt-ccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||||||||||||| | ||||| |||||||| |||||||| ||| ||| ||||||||| |||||||||||||||||||    
T  2429 aaaatgtaacaaattgcatatgtccgatttttttccttatcatttaaaaaagataatagatgaaagtgaattcaaatatt 2350  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 15474878 - 15474956
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||||||||||||||| || ||||| |||||||||||||||| ||| |||||||||  || || ||||||||||||||||    
T  15474878 aaaatgtaacaaattatatatgtccgattttttccttatcatttaaaaatgataacggatgagagtgaattcaaatatt 15474956  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 17504406 - 17504443
Alignment:
Q  55 aataaaatgtaacaaattgtacatgtctgattttttcc 92  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  17504406 aataaaatgtaacaaattgtatatgtctgatgttttcc 17504443  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 43879962 - 43880023
Alignment:
Q  171 tgtaacaaacacaatatattttttattatcacacaaaatatatctcgtaagaaacacgatat 232  Q
    |||||||||||  |||||| |||| ||| |||||||||||||||  |||| |||||||||||    
T  43879962 tgtaacaaacatgatatatatttttttaccacacaaaatatatcgtgtaacaaacacgatat 43880023  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 25182732 - 25182684
Alignment:
Q  85 ttttttccttatcacttagaaatgataatagaagaaagtgaattcaaat 133  Q
    |||||||||||||| ||| ||| ||||||||| ||||| ||||||||||    
T  25182732 ttttttccttatcatttaaaaaagataatagatgaaagcgaattcaaat 25182684  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 27579599 - 27579559
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatca 98  Q
    ||||||||||||| |||| ||||| ||||||||||||||||    
T  27579599 aaaatgtaacaaactgtatatgtccgattttttccttatca 27579559  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 44066538 - 44066490
Alignment:
Q  189 ttttttattatcacacaaaatatatctcgtaagaaacacgatatgagta 237  Q
    |||||| ||| |||||||||||||||  |||| ||||||||||||||||    
T  44066538 ttttttgttaccacacaaaatatatcatgtaacaaacacgatatgagta 44066490  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 22701677 - 22701757
Alignment:
Q  55 aataaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||||||||||||||||||||| ||||||| |||||||||||||  ||| ||| |||||| || || ||||||||||||||||    
T  22701677 aataaaatgtaacaaattgtatatgtctg-ttttttccttatcgtttaaaaaagataatggatgagagtgaattcaaatatt 22701757  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 48103081 - 48103159
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||||||| ||||||| || || ||  ||||||||||||||| ||  ||| ||||||||| || ||||||||||||||||    
T  48103081 aaaatgtgacaaattatatatatcctattttttccttatcattttaaaaagataatagacgagagtgaattcaaatatt 48103159  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 29693268 - 29693329
Alignment:
Q  173 taacaaacacaatatattttttattatcacacaaaatatatctcgtaagaaacacgatatga 234  Q
    |||||||||||||||   |||| ||| |||||||||||||||  |||| |||||||||||||    
T  29693268 taacaaacacaatattcattttgttaccacacaaaatatatcgtgtaacaaacacgatatga 29693329  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 9788614 - 9788672
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataataga 116  Q
    |||||||||||||||||| ||| ||||||||||| |||||| ||| ||| |||||||||    
T  9788614 aaaatgtaacaaattgtatatgcctgattttttctttatcatttaaaaaagataataga 9788672  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 30841299 - 30841222
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||||||||||||||| ||||||||||||||  ||| || ||| ||| |||||| || || ||||||||||||||||    
T  30841299 aaaatgtaacaaattgtatatgtctgatttttt-tttaccatttaaaaaagataatggatgacagtgaattcaaatatt 30841222  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 26621064 - 26620985
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgatt-ttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||||||||| |||||||| |||||||||| |||||||||||| ||| ||| |||||| ||  | || |||||||||||||    
T  26621064 aaaatgtaaaaaattgtatatgtctgatttttttccttatcatttaaaaaagataatggataagagagaattcaaatatt 26620985  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 28808445 - 28808522
Alignment:
Q  59 aaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||||| ||| |||| ||||| | |||||||||||||| ||| ||| |||||| || |||||| ||||||||||||    
T  28808445 aaatgtaataaactgtatatgtccgtttttttccttatcatttaaaaaagataatggatgaaagtaaattcaaatatt 28808522  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28808363 - 28808409
Alignment:
Q  1 tgtcttttttaccttcaaaaattactctcaactttcaatgcaaatat 47  Q
    |||||||||||||||| ||||||||| | |||||||||| |||||||    
T  28808363 tgtcttttttaccttcgaaaattacttttaactttcaatccaaatat 28808409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 42398623 - 42398546
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatat 135  Q
    ||||||||||||||| |  |||||||||||||| ||||| | ||| ||| ||||||  |||| |||| ||||||||||    
T  42398623 aaaatgtaacaaattttgtatgtctgatttttttcttataatttaaaaaagataattaaagagagtggattcaaatat 42398546  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 54983178 - 54983255
Alignment:
Q  59 aaatgtaacaaattgtacatgtctgattttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    |||||||||||||| || || || || ||||||||||||| ||| ||| |||||| || || ||| ||||||||||||    
T  54983178 aaatgtaacaaattatatatatccgactttttccttatcatttaaaaaagataatggatgagagttaattcaaatatt 54983255  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 13475639 - 13475590
Alignment:
Q  12 ccttcaaaaattactctcaactttcaatgcaaatattacatataataaaa 61  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  13475639 ccttcaaaaattacaatcaactttcaatgcaaatagtacatataacaaaa 13475590  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 21082661 - 21082741
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctgat---tttttccttatcacttagaaatgataatagaagaaagtgaattcaaatatt 136  Q
    ||||||||||||||||||||| ||||||   ||||||||||| | ||| ||| |||||| || | |||||||||||||||||    
T  21082661 aaaatgtaacaaattgtacatatctgatttatttttccttattatttaaaaaagataatggatg-aagtgaattcaaatatt 21082741  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 297459 - 297500
Alignment:
Q  58 aaaatgtaacaaattgtacatgtctga-ttttttccttatca 98  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  297459 aaaatgtaacaaattgtatatgtctgatttttttccttatca 297500  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 101390 - 101433
Alignment:
Q  55 aataaaatgtaacaaattgtacatgtctgattttttccttatca 98  Q
    |||||||||||||||||| || |||| |||||||||||||||||    
T  101390 aataaaatgtaacaaattatatatgtttgattttttccttatca 101433  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 31204324 - 31204280
Alignment:
Q  18 aaaattactctcaactttcaatgcaaatattacatataataaaat 62  Q
    |||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  31204324 aaaattactctcaattttcaatgctaatatcacatataatcaaat 31204280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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