View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_44 (Length: 265)
Name: NF0854_low_44
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 55518561 - 55518745
Alignment:
| Q |
4 |
agaaagaaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatc |
103 |
Q |
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| T |
55518561 |
agaaagaaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatc |
55518660 |
T |
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| Q |
104 |
gttctattctcgagattctcgatattttctgaatttcattaccactttcttggatccttgaatcaatcctcttcccatattcttc |
188 |
Q |
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| T |
55518661 |
gttctattctcgagattctcgatattttctgaatttcattaccactttcttggatccttgaatcaatcctcttcccattttcttc |
55518745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 8902925 - 8903046
Alignment:
| Q |
10 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
109 |
Q |
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|||||||| ||||| || || |||||||| ||||||||||| || ||||| ||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8902925 |
aaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagctgtggttgaatagaggctcttgtcccctttgtaatcgttcta |
8903024 |
T |
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| Q |
110 |
ttctcgagattctcgatatttt |
131 |
Q |
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|| | |||||||| || ||||| |
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| T |
8903025 |
ttattgagattcttgacatttt |
8903046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 4176009 - 4176134
Alignment:
| Q |
10 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
109 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||| |||||||||| || || ||| | | | |||| |||||||| ||||| |||| || || |
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| T |
4176009 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcatttta |
4176108 |
T |
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| Q |
110 |
ttctcgagattctcgatattttctga |
135 |
Q |
| |
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|| | || |||| |||||||||||| |
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| T |
4176109 |
ttttagaagttcttgatattttctga |
4176134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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