View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_45 (Length: 265)
Name: NF0854_low_45
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 265
Target Start/End: Original strand, 54289880 - 54290117
Alignment:
| Q |
28 |
aacaaatggctggtataacagactgtatacagtgacaggacaggtactattcaatatactgcagtgtctgtgtgcgtgatgtttcaatctagagctagat |
127 |
Q |
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| T |
54289880 |
aacaaatggctggtataacagactgtatacagtgacaggacaggtactattcaatatactgcagtgtctgtgtgtgtgatgtttcaatctagagctaaat |
54289979 |
T |
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| Q |
128 |
gttcgttagtctaatgactattgtcatttcatctatctaccaaaaataatgttgcttagtaatgattcttatcttgcttcctgcctacatgcagtatggg |
227 |
Q |
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| T |
54289980 |
gttcgttagtctaatgactattgtcatttcatctatctaccaaaaataatgttgcttagtaatgattcttatcttgcttcctgcctacatgcagtatggg |
54290079 |
T |
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| Q |
228 |
gaagaggaaacagacaagtatgcttccaaaattcagaa |
265 |
Q |
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| T |
54290080 |
gaagaggaaacagacaagtatgcttccaaaattcagaa |
54290117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 11684394 - 11684338
Alignment:
| Q |
28 |
aacaaatggctggtataacagactgtatacagtgacaggacaggtactattcaatat |
84 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
11684394 |
aacagatggttggtataacagactgtatacagcgacaggacaggtactattcgatat |
11684338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 31507885 - 31507918
Alignment:
| Q |
140 |
aatgactattgtcatttcatctatctaccaaaaa |
173 |
Q |
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| T |
31507885 |
aatgactattgtcatttcatctatctaccaaaaa |
31507918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 32487313 - 32487278
Alignment:
| Q |
141 |
atgactattgtcatttcatctatctaccaaaaataa |
176 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
32487313 |
atgactattgtcaattcatctatctaccaaaaataa |
32487278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 38080808 - 38080770
Alignment:
| Q |
137 |
tctaatgactattgtcatttcatctatctaccaaaaata |
175 |
Q |
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||||||||||||||||||||| | ||||||||||||||| |
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| T |
38080808 |
tctaatgactattgtcatttcgtatatctaccaaaaata |
38080770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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