View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0854_low_49 (Length: 261)

Name: NF0854_low_49
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0854_low_49
NF0854_low_49
[»] chr5 (3 HSPs)
chr5 (1-233)||(1363487-1363719)
chr5 (1-233)||(1407705-1407937)
chr5 (14-233)||(1369005-1369224)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1363719 - 1363487
Alignment:
Q  1 cctttaggctgcattgagaaacataattgatgagttcatctatcttcccacgcctaagatattggcttgcatcaagactcttattagagaatagttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1363719 cctttaggctgcattgagaaacataattgatgagttcatctatcttcccacgcctgagatattggcttgcatcaagactcttattagagaatagttgatt 1363620  T
Q  101 tttgcatacccttcgcatctctcgccaaagaggcgaaagagaaaggaatcccacgccaaattggtcgtggttgaaagcggttaaagcatgtggtacagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1363619 tttgcatacccttcgcatctctcgccaaagaggcgaaagagaaaggaatcccacgccaaattggtcgtggttgaaagcggttaaagcatgtggtacagtt 1363520  T
Q  201 cggtctgaaagtaaagaatcatgtgtttggagt 233  Q
    |||||||||||||||||||||||||||||||||    
T  1363519 cggtctgaaagtaaagaatcatgtgtttggagt 1363487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1407705 - 1407937
Alignment:
Q  1 cctttaggctgcattgagaaacataattgatgagttcatctatcttcccacgcctaagatattggcttgcatcaagactcttattagagaatagttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1407705 cctttaggctgcattgagaaacataattgatgagttcatctatcttcccacgcctgagatattggcttgcatcaagactcttattagagaatagttgatt 1407804  T
Q  101 tttgcatacccttcgcatctctcgccaaagaggcgaaagagaaaggaatcccacgccaaattggtcgtggttgaaagcggttaaagcatgtggtacagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1407805 tttgcatacccttcgcatctctcgccaaagaggcgaaagagaaaggaatcccacgccaaattggtcgtgattgaaagcggttaaagcatgtggtacagtt 1407904  T
Q  201 cggtctgaaagtaaagaatcatgtgtttggagt 233  Q
    |||||||||||||||||||||||||||||||||    
T  1407905 cggtctgaaagtaaagaatcatgtgtttggagt 1407937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 1369224 - 1369005
Alignment:
Q  14 ttgagaaacataattgatgagttcatctatcttcccacgcctaagatattggcttgcatcaagactcttattagagaatagttgatttttgcataccctt 113  Q
    |||||||||||||  ||||||||||||||| ||   |||||||| | ||||| |||||||||||||||| || |||||||||||||||||||||||  ||    
T  1369224 ttgagaaacataaccgatgagttcatctatttttgtacgcctaatacattggtttgcatcaagactcttgttggagaatagttgatttttgcatactttt 1369125  T
Q  114 cgcatctctcgccaaagaggcgaaagagaaaggaatcccacgccaaattggtcgtggttgaaagcggttaaagcatgtggtacagttcggtctgaaagta 213  Q
    | ||||||||||||||||||||||||||  |||||||| || || |||||||||||||||||||||||||||||||| ||||| || ||||| || ||||    
T  1369124 ctcatctctcgccaaagaggcgaaagagggaggaatccaaccccgaattggtcgtggttgaaagcggttaaagcatgaggtacggtacggtccgagagta 1369025  T
Q  214 aagaatcatgtgtttggagt 233  Q
    | |||||||| |||||||||    
T  1369024 aggaatcatgagtttggagt 1369005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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