View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_52 (Length: 251)
Name: NF0854_low_52
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_52 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 17822015 - 17822221
Alignment:
| Q |
44 |
ctttctaaaattgaaacttcccacgactatatcatggggttccaagaccacattgtatggactctttgattttcctagtggactctttgatatttgctag |
143 |
Q |
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| T |
17822015 |
ctttctaaaattgaaacttcccacgactatatcatggggtcccaagaccatattgtatggactctttgaatttcctaggggactctttgatatttgctag |
17822114 |
T |
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| Q |
144 |
gggcaatgtttttaacttcgttttcgatgttaatgttttcaacttgacaaatttcatataaaaaagttgtatattgtccttttcaacttatgacggagcc |
243 |
Q |
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| T |
17822115 |
gagcaatgtttttaacttcgttttccatgttaatgttttcaacttgccaaatttcatataaaaaagttgtat-ttgtccttttcaacttatgacggagcc |
17822213 |
T |
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| Q |
244 |
agaatgca |
251 |
Q |
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| T |
17822214 |
agaatgca |
17822221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 17872813 - 17872912
Alignment:
| Q |
155 |
ttaacttcgttttcgatgttaatgttttcaacttgacaaatttcatataaaaaag---ttgtatattgtccttttcaacttatgacggagccagaatgca |
251 |
Q |
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| T |
17872813 |
ttaacttccttttccacggtaatgttttttacttgacaaatttcatataaaccatgtattttgtattgtccttttccacttatgacggagccagaatgca |
17872912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 17874244 - 17874280
Alignment:
| Q |
215 |
tattgtccttttcaacttatgacggagccagaatgca |
251 |
Q |
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| T |
17874244 |
tattgtccttttccacttatgaaggagccagaatgca |
17874280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 17883715 - 17883683
Alignment:
| Q |
51 |
aaattgaaacttcccacgactatatcatggggt |
83 |
Q |
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| T |
17883715 |
aaattgaaacttcccacgactatatcacggggt |
17883683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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