View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_56 (Length: 250)
Name: NF0854_low_56
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41380753 - 41380519
Alignment:
| Q |
1 |
cttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnnnaataatgtta----taagcacatgtttaatatttgc |
96 |
Q |
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| T |
41380753 |
cttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttttaataatgttataattaagcacatgtttaatatttgc |
41380654 |
T |
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| Q |
97 |
tccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagccaagacctacca |
196 |
Q |
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| T |
41380653 |
tccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattatccttgaagccaagtcctacca |
41380554 |
T |
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| Q |
197 |
gttttactcttaaactccttggcaatgatgatgtc |
231 |
Q |
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| T |
41380553 |
gttttactcttaaactccttgacaatgatgatgtc |
41380519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 7970245 - 7970105
Alignment:
| Q |
67 |
taatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgag |
166 |
Q |
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| T |
7970245 |
taatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagcattgag |
7970146 |
T |
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| Q |
167 |
gagtattatacttgaagccaagacctaccagttttactctt |
207 |
Q |
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| T |
7970145 |
gagtattatacttgaagccaagacctaccagttttactctt |
7970105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 8043469 - 8043604
Alignment:
| Q |
72 |
ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagta |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
8043469 |
ttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgaggagta |
8043568 |
T |
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| Q |
172 |
ttatacttgaagccaagacctaccagttttactctt |
207 |
Q |
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| T |
8043569 |
ttatacttgaagccaagacctaccagttttactctt |
8043604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 8033566 - 8033668
Alignment:
| Q |
105 |
ttacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
204 |
Q |
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||||||||| |||||||| |||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033566 |
ttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
8033665 |
T |
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| Q |
205 |
ctt |
207 |
Q |
| |
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||| |
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| T |
8033666 |
ctt |
8033668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8043386 - 8043435
Alignment:
| Q |
1 |
cttgtcttggtggattaattgggtaggtatctttaattattgcatttttt |
50 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
8043386 |
cttgtcttggtggattaattgggtaggcatctttaattattgtatttttt |
8043435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7970318 - 7970281
Alignment:
| Q |
5 |
tcttggtggattaattgggtaggtatctttaattattg |
42 |
Q |
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| T |
7970318 |
tcttggtggattaattgggtaggtatctttaattattg |
7970281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 8033453 - 8033503
Alignment:
| Q |
5 |
tcttggtggattaattgggtaggtatctttaattattgcattttttctcta |
55 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
8033453 |
tcttggtggactaattgggtaggtatctttaattattgtttgttttctcta |
8033503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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