View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_57 (Length: 249)
Name: NF0854_low_57
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41380729 - 41380950
Alignment:
| Q |
1 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41380729 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagatga |
41380828 |
T |
|
| Q |
101 |
gtaagattatgattatctaagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380829 |
gtaagattatgattatctaagaaaatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaat |
41380928 |
T |
|
| Q |
201 |
cccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
41380929 |
cccaggaggccaccaaaaaatg |
41380950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 43855252 - 43855186
Alignment:
| Q |
156 |
cttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||| |||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatg |
43855186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 43856685 - 43856729
Alignment:
| Q |
155 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
199 |
Q |
| |
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||||||||| ||||| ||||||||||| |||||||||||||||| |
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|
| T |
43856685 |
gcttacaaagtatgtcattggagcaaaaacaaatcctccaaaaaa |
43856729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7970298 - 7970521
Alignment:
| Q |
1 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |
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|
| T |
7970298 |
tacccaattaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagttaa |
7970397 |
T |
|
| Q |
101 |
gtaagattatgattat-ctaagaaaatttagtaattatgtttacaa-tttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaa |
198 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7970398 |
gcaagattatgattatcctaagaaaatttagtaattatatttacaattttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaa |
7970497 |
T |
|
| Q |
199 |
atcccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
|||| | ||||||||| ||||||| |
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|
| T |
7970498 |
atcctaagaggccaccgaaaaatg |
7970521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8043410 - 8043188
Alignment:
| Q |
1 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | |
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| T |
8043410 |
tacccaattaatccaccaagacaagctgaatctctttggtttgtagagtttaagccacacaatacatggaagctgaaaatttaatagaatgaaaagttaa |
8043311 |
T |
|
| Q |
101 |
gtaagattatgattat-ctaagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
199 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
8043310 |
gcaagattatgattatcctaagaaaatttagtaattacatttacaatttctcatggcttacataatatgttgctggagcaaaagcaaatcctccaaaaaa |
8043211 |
T |
|
| Q |
200 |
tcccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
||| | ||||||||| ||||||| |
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|
| T |
8043210 |
tcctaagaggccaccgaaaaatg |
8043188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8033473 - 8033252
Alignment:
| Q |
1 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatga |
100 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||||||||||| | || || ||||||||||||| |
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|
| T |
8033473 |
tacccaattagtccaccaagagaagctgaatctctttggtttgtaaaggattagccacatgatacatggaagctgaaa-tgtaatataatgaaaagatga |
8033375 |
T |
|
| Q |
101 |
gtaagattatgattatc-taagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
199 |
Q |
| |
|
| || |||||||| ||| ||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8033374 |
gcaaaattatgataatcctaagaaaatccagtgattatatttacaatttttcatggcttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaa |
8033275 |
T |
|
| Q |
200 |
tcccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
||| || |||||||| ||||||| |
|
|
| T |
8033274 |
tcctagaaggccaccgaaaaatg |
8033252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 7977223 - 7977293
Alignment:
| Q |
152 |
atggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatg |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||| | ||||||| |
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|
| T |
7977223 |
atggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatg |
7977293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7976913 - 7976993
Alignment:
| Q |
1 |
tacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatt |
81 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| | |||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7976913 |
tacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaatt |
7976993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 14197281 - 14197346
Alignment:
| Q |
155 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaa |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaa |
14197346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 14197141 - 14197211
Alignment:
| Q |
13 |
ccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaattta |
83 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||| || ||||| ||||||||||||| |
|
|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaattta |
14197211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 34410630 - 34410575
Alignment:
| Q |
16 |
ccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaa |
71 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
34410630 |
ccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgatacatggaa |
34410575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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