View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0854_low_6 (Length: 558)
Name: NF0854_low_6
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 41380753 - 41380192
Alignment:
| Q |
1 |
cttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnnnaataatgtta----taagcacatgtttaatatttgc |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
41380753 |
cttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttttaataatgttataattaagcacatgtttaatatttgc |
41380654 |
T |
|
| Q |
97 |
tccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagccaagacctacca |
196 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
41380653 |
tccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattatccttgaagccaagtcctacca |
41380554 |
T |
|
| Q |
197 |
gttttactcttaaactccttggcaatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacat |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380553 |
gttttactcttaaactccttgacaatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacat |
41380454 |
T |
|
| Q |
297 |
aattgagtttcaattgaagaacaaatgaaggaaattgcttctattcaatgata-tttttgtgtgtggaagattcaatgannnnnnnnncttgcttaaatg |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
41380453 |
aattgagtttcaattgaagaacaaatgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatgatttttttttcttgcttaaatg |
41380354 |
T |
|
| Q |
396 |
ttttaagtgaagc-ttttttggtgagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaata |
494 |
Q |
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| T |
41380353 |
ttttaagtgaagctttttttggggagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatg |
41380254 |
T |
|
| Q |
495 |
gatgagaaaattaaactacagatacattatatgagctaggttttgtaatattgttggagatg |
556 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
41380253 |
gatgagaaaattaaactacagatacattatatgagctaggttttgtaattttgttgaagatg |
41380192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 7970245 - 7970105
Alignment:
| Q |
67 |
taatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgag |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
7970245 |
taatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagcattgag |
7970146 |
T |
|
| Q |
167 |
gagtattatacttgaagccaagacctaccagttttactctt |
207 |
Q |
| |
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| T |
7970145 |
gagtattatacttgaagccaagacctaccagttttactctt |
7970105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 8043469 - 8043604
Alignment:
| Q |
72 |
ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagta |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
8043469 |
ttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgaggagta |
8043568 |
T |
|
| Q |
172 |
ttatacttgaagccaagacctaccagttttactctt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8043569 |
ttatacttgaagccaagacctaccagttttactctt |
8043604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 8043677 - 8043819
Alignment:
| Q |
234 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac-aaatgaaggaaatt |
332 |
Q |
| |
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|||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| | ||||| |||||||||||||| |
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| T |
8043677 |
ttttctctatgatttgtttattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttcaatggtagaacaaaatgaaggaaatt |
8043776 |
T |
|
| Q |
333 |
gcttctattcaatgata-tttttgtgtgtggaagattcaatga |
374 |
Q |
| |
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| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8043777 |
gtttctattcaatgatattttttgtgtgtggaagattcaatga |
8043819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 8033566 - 8033668
Alignment:
| Q |
105 |
ttacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
204 |
Q |
| |
|
||||||||| |||||||| |||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033566 |
ttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
8033665 |
T |
|
| Q |
205 |
ctt |
207 |
Q |
| |
|
||| |
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|
| T |
8033666 |
ctt |
8033668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 8033741 - 8033814
Alignment:
| Q |
234 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
307 |
Q |
| |
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|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
8033741 |
ttttctctatgatttatttattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
8033814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 549
Target Start/End: Original strand, 8043890 - 8043995
Alignment:
| Q |
445 |
tctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaa-ttaaactacagatacattatatgagctaggttttgtaat |
543 |
Q |
| |
|
|||||||||||||||||| ||| |||||| || |||||| | | |||| |||||||||| ||||||||||||||||| ||||||| |||||||| |||| |
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|
| T |
8043890 |
tctataatagatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaattaaactacagatacataatatgagttaggttttataat |
8043989 |
T |
|
| Q |
544 |
attgtt |
549 |
Q |
| |
|
||||| |
|
|
| T |
8043990 |
tttgtt |
8043995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 556
Target Start/End: Original strand, 8033905 - 8034026
Alignment:
| Q |
440 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgt---aaaaatagatgagaaaattaaactacagatacat----tatatgagcta |
532 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||| | ||||| | ||||| ||||||| |||||||||||| ||||||||||| |
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| T |
8033905 |
tagcatctataatagatgcttggttgaagtacaaaa-ttagaaagtattaaaaaaaaaaatgag-aaattaagctacagatacattatatatatgagcta |
8034002 |
T |
|
| Q |
533 |
ggttttgtaatattgttggagatg |
556 |
Q |
| |
|
||||||||||| |||||| ||||| |
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|
| T |
8034003 |
ggttttgtaattttgttgaagatg |
8034026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 7970065 - 7969970
Alignment:
| Q |
213 |
ccttggcaatgatgatgtctattttctctatgattgatt-tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
307 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || | ||||| ||| |||| ||||||||||||||||||||||||| |||||| |||||||| |
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| T |
7970065 |
ccttgacaatgatgatatctattttctctatgcttttctctattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttc |
7969970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8043386 - 8043435
Alignment:
| Q |
1 |
cttgtcttggtggattaattgggtaggtatctttaattattgcatttttt |
50 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
8043386 |
cttgtcttggtggattaattgggtaggcatctttaattattgtatttttt |
8043435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 556
Target Start/End: Complemental strand, 7969879 - 7969754
Alignment:
| Q |
440 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaa-------atagatgagaaaattaaactacagatacat----tatatga |
528 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||| | ||| ||| ||||| ||||||| |||||||||||| ||||||| |
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|
| T |
7969879 |
tagcatctataatagatgcttgattgaagtacaaaa-ttagaaagtattaaaaaaatatatatatgag-aaattaagctacagatacattatatatatga |
7969782 |
T |
|
| Q |
529 |
gctaggttttgtaatattgttggagatg |
556 |
Q |
| |
|
||||||||||||||| |||||| ||||| |
|
|
| T |
7969781 |
gctaggttttgtaattttgttgaagatg |
7969754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7970318 - 7970281
Alignment:
| Q |
5 |
tcttggtggattaattgggtaggtatctttaattattg |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970318 |
tcttggtggattaattgggtaggtatctttaattattg |
7970281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 8033453 - 8033503
Alignment:
| Q |
5 |
tcttggtggattaattgggtaggtatctttaattattgcattttttctcta |
55 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
8033453 |
tcttggtggactaattgggtaggtatctttaattattgtttgttttctcta |
8033503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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