View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_68 (Length: 216)
Name: NF0854_low_68
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 36756389 - 36756226
Alignment:
| Q |
18 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgac |
117 |
Q |
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| T |
36756389 |
ctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgattatcttatttgatcagtaatttgac |
36756290 |
T |
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| Q |
118 |
attactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
36756289 |
attactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatcccattcatct |
36756226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 36755938 - 36755839
Alignment:
| Q |
82 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
181 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 36749063 - 36748931
Alignment:
| Q |
18 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgac |
117 |
Q |
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|||||||||||||||| |||||| ||| ||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
36749063 |
ctttgtactgcaatgagttttgatattttaattcttcaatttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgac |
36748964 |
T |
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| Q |
118 |
attactcttgcaattttctacgcttaattcgtt |
150 |
Q |
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| T |
36748963 |
attactcttggaactttctacgtttaatacgtt |
36748931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 36772064 - 36772014
Alignment:
| Q |
18 |
ctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
68 |
Q |
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||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |
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| T |
36772064 |
ctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 36767406 - 36767357
Alignment:
| Q |
132 |
tttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
181 |
Q |
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|||| ||||||||||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
36767406 |
tttccacgcttaattcgtccaaagatttctttaaattatcccgttcatct |
36767357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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