View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0854_low_7 (Length: 557)
Name: NF0854_low_7
Description: NF0854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0854_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 102 - 466
Target Start/End: Complemental strand, 32080455 - 32080091
Alignment:
| Q |
102 |
acagaagaatttggggacggtaccatgaatgcttaatcatttgtacatatagattttcttcttttcacttgaggatgaaggaaatggtgattatgtatga |
201 |
Q |
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| T |
32080455 |
acagaagaatttggggacggtaccatgaatgcttaatcatttgtacatatagattttcttcttttcacttgaggatgaaggaaatggtgattatgtatga |
32080356 |
T |
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| Q |
202 |
aaattagtttggaggccctctattgaaatgaaatatatttgaaatttattgacagatgctctcatttatgcacaaattacatttgtgacattcttgtctt |
301 |
Q |
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| T |
32080355 |
aaattagtttggaggccctctattgaaatgaaatatatttgaaatttattgacagatgctctcatttatgcacaaattacatttgtgacattcttgtctt |
32080256 |
T |
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| Q |
302 |
ttattgcattgtgtaaaaagtattaaagctacttcctggttctatttcgccgctcaaccattcttttccgttacgttaaaattagaacaacacagttggg |
401 |
Q |
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| T |
32080255 |
ttattgcattgtgtaaaaagtattaaagctacttcctggttctatttcgccgctcaaccattcttttccgttatgttaaaattagaacaacacagttggg |
32080156 |
T |
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| Q |
402 |
tgctcaaccatctggtggatgacttgaggaagaccgtcggcctctatgcatcatgcaaaaggacg |
466 |
Q |
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| T |
32080155 |
tgctcaaccatctggtggatgacttgaggaagaccgtcggcctctatgcatcatgcaaaaggacg |
32080091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 32080084 - 32080033
Alignment:
| Q |
454 |
atgcaaaaggacgagacatataattcaagaaattatccaaatttgattctgc |
505 |
Q |
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| T |
32080084 |
atgcaaaaggacgagacatataattcaagaaattatccaaatttgattctgc |
32080033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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